Concepedia

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

David A. Hughes, Rodrigo Bacigalupe, Jun Wang, Malte Rühlemann, Raúl Y. Tito, Gwen Falony, Marie Joossens, Sara Vieira‐Silva, Liesbet Henckaerts, Leen Rymenans,

Nature Microbiology · 2020 · 278 citations · 50 references

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Concepts

References

50

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

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DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations

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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

Shaun Purcell, Benjamin M. Neale, Katherine EO Todd-Brown et al. · The American Journal of Human Genetics · 2007 · 36.1K citations · Full text

, , +13

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price, Paramvir Dehal, Adam P. Arkin · PLoS ONE · 2010 · 16K citations · Full text

, , +17

Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression

Jack Bowden, George Davey Smith, Stephen Burgess · International Journal of Epidemiology · 2015 · 10.6K citations · Full text

, , +15