Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss, Sarah L. Westcott, Thomas Ryabin, +12

Applied and Environmental Microbiology

UPARSE: highly accurate OTU sequences from microbial amplicon reads

R. C. Edgar

Nature Methods

Long-read SequencingAccurate Otu SequencesSequence AnalysisMicrobiologyGenomics +3

UCHIME improves sensitivity and speed of chimera detection

R. C. Edgar, Brian J. Haas, José C. Clemente, +2

Bioinformatics

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower, Lucia Alvarado, Sandra L. Lee

Nature

Microbiota StructureDysbiosisHealthy Human MicrobiomeMicrobiotaGut Microbiology +5

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

J. Gregory Caporaso, Christian L. Lauber, William A. Walters, +11

The ISME Journal

GeneticsMiseq PlatformsGenomicsIllumina Hiseq2000High Throughput Sequencing +15

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

James J. Kozich, Sarah L. Westcott, Nielson T. Baxter, +2

Applied and Environmental Microbiology

GeneticsCuration PipelineGenomicsDual-index Sequencing StrategyMicrobial Evolution +19

Vaginal microbiome of reproductive-age women

Jacques Ravel, Pawel Gajer, Zaid Abdo, +12

Proceedings of the National Academy of Sciences

Removing Noise From Pyrosequenced Amplicons

BMC Bioinformatics

Error filtering, pair assembly and error correction for next-generation sequencing reads

R. C. Edgar, Henrik Flyvbjerg

Bioinformatics

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

Melanie Schirmer, Umer Zeeshan Ijaz, R. D'Amore, +3

Nucleic Acids Research

GeneticsGenetic EpidemiologyGenomicsIllumina Miseq PlatformHigh Throughput Sequencing +21