eLife · 2020 · 317 citations · 62 references
Life SciencesCell BiologyDevelopmental BiologyCell DifferentiationEpigenomicsStem Cell BiologyBlastocyst DevelopmentCell Lineage SpecificationDevelopmental Cell Fate SpecificationLineage ReconstructionPluripotent Stem CellsStem Cell DifferentiationCell Fate DecisionsChromatin AccessibilityChromatin Accessibility AnalysisEpigenomic LandscapeEpigenomic SignaturesExtraembryonic Lineage SpecificationLineage SpecificationTrophectoderm Differentiation
Naïve human pluripotent stem cells (hPSCs) provide a unique experimental platform of cell fate decisions during pre-implantation development, but their lineage potential remains incompletely characterized. As naïve hPSCs share transcriptional and epigenomic signatures with trophoblast cells, it has been proposed that the naïve state may have enhanced predisposition for differentiation along this extraembryonic lineage. Here we examined the trophoblast potential of isogenic naïve and primed hPSCs. We found that naïve hPSCs can directly give rise to human trophoblast stem cells (hTSCs) and undergo further differentiation into both extravillous and syncytiotrophoblast. In contrast, primed hPSCs do not support hTSC derivation, but give rise to non-self-renewing cytotrophoblasts in response to BMP4. Global transcriptome and chromatin accessibility analyses indicate that hTSCs derived from naïve hPSCs are similar to blastocyst-derived hTSCs and acquire features of post-implantation trophectoderm. The derivation of hTSCs from naïve hPSCs will enable elucidation of early mechanisms that govern normal human trophoblast development and associated pathologies.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
GENCODE: The reference human genome annotation for The ENCODE Project
Jennifer Harrow, Adam Frankish, José M. González et al. · Genome Research · 2012 · 5K citations · Full text