Concepedia

Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota

Fiona Whelan, Barbara J. Waddell, Saad A. Syed, Shahrokh Shekarriz, Harvey Rabin, Michael D. Parkins, Michael G. Surette

Nature Microbiology · 2020 · 98 citations · 79 references

DOIFull text

Open access

Concepts

References

79

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes · PLoS ONE · 2013 · 22.5K citations · Full text

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Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

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Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Qiong Wang, George M Garrity, James M. Tiedje et al. · Applied and Environmental Microbiology · 2007 · 20.5K citations · Full text

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