Comparative metagenomic sequencing analysis of cecum microbiotal diversity and function in broilers and layers

Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

Life Sciences, Bioinformatics, Biology +14

CD-HIT: accelerated for clustering the next-generation sequencing data

LiMin Fu, Beifang Niu, Zhengwei Zhu et al. · Bioinformatics · 2012 · 11.8K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +12

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

Chen Xie, Xizeng Mao, Jiaju Huang et al. · Nucleic Acids Research · 2011 · 5.5K citations · Full text

Life Sciences, Bioinformatics, Genetics +15

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Daniel McDonald, Morgan N. Price, Julia K. Goodrich et al. · The ISME Journal · 2011 · 5.3K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17