Emerging infectious diseases · 2018 · 18 citations · 46 references
Life SciencesInfectious DiseasesMicrobiologyHost-pathogen InteractionsMedical MicrobiologyMicrobial GeneticsBacterial PathogenesisBacterial ToxinsBacterial Virulence FactorsGastrointestinal InfectionsInfectious DiarrheaPathogen GenomicsBacterial Virulence GenesEscherichia ColiEscherichia Coli O157:h7 InfectionShiga ToxinsToxin GenesToxin-producing BacteriaVirulence DeterminantsVirulence Gene Identification
Among Shiga toxin (Stx)-producing Escherichia coli (STEC) O157:H7 strains, those producing Stx2a cause more severe diseases. Atypical STEC O157:H7 strains showing a β-glucuronidase-positive phenotype (GP STEC O157:H7) have rarely been isolated from humans, mostly from persons with asymptomatic or mild infections; Stx2a-producing strains have not been reported. We isolated, from a patient with bloody diarrhea, a GP STEC O157:H7 strain (PV15-279) that produces Stx2a in addition to Stx1a and Stx2c. Genomic comparison with other STEC O157 strains revealed that PV15-279 recently emerged from the stx1a/stx2c-positive GP STEC O157:H7 clone circulating in Japan. Major virulence genes are shared between typical (β-glucuronidase-negative) and GP STEC O157:H7 strains, and the Stx2-producing ability of PV15-279 is comparable to that of typical STEC O157:H7 strains; therefore, PV15-279 presents a virulence potential similar to that of typical STEC O157:H7. This study reveals the importance of GP O157:H7 as a source of highly pathogenic STEC clones.
46
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Bruce J. Walker, Thomas Abeel, Terrance Shea et al. · PLoS ONE · 2014 · 10.2K citations · Full text