Concepedia

High-quality genome sequences of uncultured microbes by assembly of read clouds

Alex Bishara, Eli L. Moss, Mikhail Kolmogorov, Alma E. Parada, Ziming Weng, Arend Sidow, Anne Dekas, Serafim Batzoglou, Ami S. Bhatt

Nature Biotechnology · 2018 · 138 citations · 46 references

DOI

Concepts

References

46

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

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Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

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