pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

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Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

David R. Kelley, Jasper Snoek, John L. Rinn · Genome Research · 2016 · 1.1K citations · Full text

Feature Visualization

Chris Olah, Alexander Mordvintsev, Ludwig Schubert · Distill · 2017 · 797 citations · Full text

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

Christof Angermueller, Heather Lee, Wolf Reik et al. · Genome biology · 2017 · 525 citations · Full text

REDIportal: a comprehensive database of A-to-I RNA editing events in humans

Ernesto Picardi, Anna Maria D’Erchia, Claudio Lo Giudice et al. · Nucleic Acids Research · 2016 · 379 citations · Full text

Engineering, Genetics, Comprehensive Database +17