Concepedia

Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation

Lillian B. Cohn, Israel Tojal da Silva, Renan Valieris, Amy S. Huang, Julio C. C. Lorenzi, Yehuda Z. Cohen, Joy A. Pai, Allison L. Butler, Marina Caskey, Mila Janković,

Nature Medicine · 2018 · 151 citations · 47 references

DOI

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47

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17

HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text

, , +11

Spatial reconstruction of single-cell gene expression data

Rahul Satija, Jeffrey A. Farrell, David Gennert et al. · Nature Biotechnology · 2015 · 7.7K citations · Full text

, , +14

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

Greg Finak, Andrew McDavid, Masanao Yajima et al. · Genome biology · 2015 · 3.6K citations · Full text

, , +15

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

Aaron T. L. Lun, Davis J. McCarthy, John C. Marioni · F1000Research · 2016 · 1.8K citations · Full text

, , +17