MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

Long-read Sequencing, Sequence Assembly, Natural Sciences +7

Canu: scalable and accurate long-read assembly via adaptive <i>k</i> -mer weighting and repeat separation

Sergey Koren, Brian P. Walenz, Konstantin Berlin et al. · Genome Research · 2017 · 7.8K citations · Full text

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.2K citations

Long-read Sequencing, Sequencing, Next-generation Sequencing +10

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid, Adrian Fehr, Jeremy Gray et al. · Science · 2008 · 3.7K citations

Dna Analysis, Template Position, Molecular Biology +20

Phased diploid genome assembly with single-molecule real-time sequencing

Chen-Shan Chin, Paul Peluso, Fritz J. Sedlazeck et al. · Nature Methods · 2016 · 2.2K citations · Full text

Long-read Sequencing, Dna Sequencing, Natural Sciences +10