Nature · 2017 · 763 citations · 57 references
Life SciencesGeneticsMolecular BiologyEpigenomicsGenome OrganizationGenomicsChromatinEnhancer ArchitectureEnhancer FunctionGene MappingGenome ArchitectureEnhancer CooperationEnhancer Core ArchitectureEnhancer-promoter ContactsEnhancer-promoter Interaction MappingPromoter-enhancer Contacts
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BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S.P. Rao, Miriam Huntley, Neva C. Durand et al. · Cell · 2014 · 9.9K citations · Full text
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon, Siddarth Selvaraj, Feng Yue et al. · Nature · 2012 · 7.4K citations · Full text
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte, David A. Orlando, Denes Hnisz et al. · Cell · 2013 · 4.3K citations · Full text