Genomics · 2017 · 81 citations · 22 references
Life SciencesBioinformaticsBiologyGenome AssemblyGenomicsSequence AnalysisDna SequencingNext-generation SequencingOverlap-layout-consensus AssemblyRead MappingSequence AssemblySequence Quality ControlMapping Quality EstimationRead AlignmentRead Mapping Validation
22
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
W. James Kent · Genome Research · 2002 · 8.4K citations · Full text
The Complete Genome Sequence of <i>Escherichia coli</i> K-12
Frederick R. Blattner, Guy Plunkett, Craig A. Bloch et al. · Science · 1997 · 7.5K citations