Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

Life Sciences, Bioinformatics, High-performance Computing +15

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

Life Sciences, Cell Biology, Molecular Biology +16

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +16

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

Eran Eden, Roy Navon, Israel Steinfeld et al. · BMC Bioinformatics · 2009 · 3.7K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +16

Trypan Blue Exclusion Test of Cell Viability

Warren Strober · Current Protocols in Immunology · 2015 · 2.6K citations

Life Sciences, Cell Biology, Apoptosis +10