Concepedia

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

Stefan Schoenfelder, R. Sugar, Andrew Dimond, Biola M. Javierre, Harry Armstrong, Borbála Mifsud, Emilia Dimitrova, Louise S. Matheson, Filipe Tavares-Cadete, Mayra Furlan-Magaril,

Nature Genetics · 2015 · 413 citations · 47 references

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47

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

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TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

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