Genome Announcements · 2014 · 49 citations · 10 references
Life SciencesInfectious DiseasesMicrobiologyComparative GenomicsGenomicsMedical MicrobiologyGenome SequencingGenomic EpidemiologyMicrobial PhylogenomicsPathogen GenomicsPathogen Sequence AnalysisPhylogenetic EpidemiologyLineage AssignmentLineage NomenclaturePathogen Genome AnnotationPathogen Genome SequencingPathogen PhylogeneticsPhylogenetic Analysis Of PathogensPhylogenomics Of PathogensPopulation Genomics Of Pathogens
Bordetella pertussis is the causative agent of pertussis, a disease which has resurged despite vaccination. We report the complete, annotated genomes of isolates B1917 and B1920, representing two lineages predominating globally in the last 50 years. The B1917 lineage has been associated with the resurgence of pertussis in the 1990s.
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Rafael Lozano, Mohsen Naghavi, Kyle J Foreman et al. · The Lancet · 2012 · 14.3K citations · Full text
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.3K citations
Frits R. Mooi, Inge H. M. van Loo, Marjolein van Gent et al. · Emerging infectious diseases · 2009 · 348 citations · Full text
Veterinary Medicine, Infectious Disease Control, Infectious Diseases +12
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto, G. Dillon, Wim S. Degrave et al. · Nucleic Acids Research · 2011 · 318 citations · Full text