Concepedia

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

John R. Prensner, Matthew K. Iyer, O. Alejandro Balbin, Saravana M. Dhanasekaran, Qi Cao, J. Chad Brenner, Bharathi Laxman, Irfan A. Asangani, Catherine S. Grasso, Hal D. Kominsky,

Nature Biotechnology · 2011 · 1K citations · 45 references

DOIFull text

Open access

Concepts

References

45

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

In silico prediction of protein-protein interactions in human macrophages

Oussema Souiai, Fatma Z. Guerfali, Slimane Ben Miled et al. · BMC Research Notes · 2014 · 11K citations · Full text

, , +17

Significance analysis of microarrays applied to the ionizing radiation response

Virginia Goss Tusher, Robert Tibshirani, Gilbert Chu · Proceedings of the National Academy of Sciences · 2001 · 10.7K citations · Full text

, , +16

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text

, , +14