Journal of Medicinal Chemistry · 2006 · 66 citations · 47 references
PharmacyMedicinal ChemistryPharmacologyDrug DesignDrug DiscoveryLead OptimizationBinding Affinity PredictionLigand-based DesignMolecular DockingProtein DockingProtein-ligand DockingVirtual ScreeningActive SitesCombinatorial Library DesignCombinatorial Library ScreeningLigand-based Target DiscoveryPhospholipase A2 InhibitionProtein TargetsScaffold Library DesignTherapeutic Target Identification
A collection of 2150 druggable active sites from the Protein Data Bank was screened by high-throughput docking to identify putative targets for five representative molecules of a combinatorial library sharing a 1,3,5-triazepan-2,6-dione scaffold. Five targets were prioritized for experimental evaluation by computing enrichment in individual protein entries among the top 2% scoring targets. Out of the five proposed proteins, secreted phospholipase A2 (sPLA2) was shown to be a true target for a panel of 1,3,5-triazepan-2,6-diones which exhibited micromolar affinities toward two human sPLA2 members.
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Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations
Improved protein–ligand docking using GOLD
Marcel L. Verdonk, Jason C. Cole, Michael J. Hartshorn et al. · Proteins Structure Function and Bioinformatics · 2003 · 3K citations · Full text
Amos Bairoch · Nucleic Acids Research · 2000 · 1.2K citations · Full text