Concepedia

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

Zhang Zhang, Jingfa Xiao, Jiayan Wu, Haiyan Zhang, Guiming Liu, Xumin Wang, Lin Dai

Biochemical and Biophysical Research Communications · 2012 · 667 citations · 20 references

DOI

Concepts

References

20

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Julie Thompson, Desmond G. Higgins, Toby J. Gibson · Nucleic Acids Research · 1994 · 64.9K citations · Full text

, , +14

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text

, , +13

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

Kazutaka Katoh · Nucleic Acids Research · 2002 · 17.8K citations · Full text

, , +13

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Molecular Biology and Evolution · 2007 · 14.8K citations · Full text

, , +17

Database resources of the National Center for Biotechnology Information: update

David Wheeler · Nucleic Acids Research · 2003 · 11K citations · Full text

, , +17