Microbial Physiology · 2007 · 30 citations · 21 references
Life SciencesBiochemistryMicrobiologyBacteriologyMicrobial PhysiologyProteomicsMicrobial ProteomicsProtein AnalysisProtein CharacterizationProtein ElectrophoresisProtein IdentificationProtein MetabolismAbc TransportersBacterial ConjugationCell Wall TurnoverGel ElectrophoresisSignal Peptide PredictionTransportersTwo-dimensional ElectrophoresisTwo-dimensional Gel Electrophoresis
Extracellular proteins of Bifidobacterium longum may mediate important interactions with the host. Here, we report on a comprehensive analysis of such proteins by using protein-free culture conditions and two-dimensional gel electrophoresis followed by mass spectrometry for protein identification. Seventeen proteins were detected in the culture supernatant, and 14 of them could be identified. Among these were 3 hypothetical solute-binding proteins of ABC transporters, an invasion-associated protein homolog, putative enzymes catalyzing cell wall turnover, several polypeptides with similarity to bacterial conjugation proteins, and 3 proteins of unknown function. Surprisingly, aldolase, usually considered as a cytoplasmic protein, was found in the culture supernatant. All proteins, excluding aldolase, were predicted to contain a signal peptide and a signal peptide cleavage site in their immature form. Some of the excreted proteins are interesting targets for further genetic and physiological studies.
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Improved Prediction of Signal Peptides: SignalP 3.0
Jannick Dyrløv Bendtsen, Henrik Nielsen, Gunnar von Heijne et al. · Journal of Molecular Biology · 2004 · 6.4K citations
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Jannick Dyrløv Bendtsen, Lars Kiemer, Anders Fausbøll et al. · BMC Microbiology · 2005 · 733 citations · Full text
Life Sciences, Biology, Microbiology +17
PrediSi: prediction of signal peptides and their cleavage positions
Karsten Hiller, Andreas Grote, Maurice Scheer et al. · Nucleic Acids Research · 2004 · 507 citations · Full text