Concepedia

Integrator Regulates Transcriptional Initiation and Pause Release following Activation

Alessandro Gardini, David Baillat, Matteo Cesaroni, Deqing Hu, Jill M. Marinis, Eric J. Wagner, Mitchell A. Lazar, Ali Shilatifard, Ramin Shiekhattar

Molecular Cell · 2014 · 218 citations · 37 references

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37

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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RSeQC: quality control of RNA-seq experiments

Liguo Wang, Shengqin Wang, Wei Li · Bioinformatics · 2012 · 3K citations · Full text

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Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

Leighton J. Core, Joshua J. Waterfall, John T. Lis · Science · 2008 · 2.1K citations · Full text

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