PLoS Computational Biology · 2015 · 70 citations · 53 references
Life SciencesBiochemistryMolecular BiologyMolecular EvolutionProtein FoldingStructural BiologyChaperone-assisted FoldingChaperone-mediated FoldingMolecular ChaperonesProtein DynamicsProtein Folding PathwaysProtein StructureBacterial ChaperonesChaperone-mediated Folding PathwaysChaperone-substrate InteractionsConformational TransitionsEukaryotic ChaperonesHsp70 Chaperone SystemProtein Family EvolutionStructural Biology Of Chaperones
Hsp70s are a class of ubiquitous and highly conserved molecular chaperones playing a central role in the regulation of proteostasis in the cell. Hsp70s assist a myriad of cellular processes by binding unfolded or misfolded substrates during a complex biochemical cycle involving large-scale structural rearrangements. Here we show that an analysis of coevolution at the residue level fully captures the characteristic large-scale conformational transitions of this protein family, and predicts an evolutionary conserved-and thus functional-homo-dimeric arrangement. Furthermore, we highlight that the features encoding the Hsp70 dimer are more conserved in bacterial than in eukaryotic sequences, suggesting that the known Hsp70/Hsp110 hetero-dimer is a eukaryotic specialization built on a pre-existing template.
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Guidelines for the nomenclature of the human heat shock proteins
Harm H. Kampinga, Jurre Hageman, Michel J. Vos et al. · Cell Stress and Chaperones · 2008 · 1.4K citations · Full text
Protein 3D Structure Computed from Evolutionary Sequence Variation
Debora S. Marks, Lucy J. Colwell, Robert P. Sheridan et al. · PLoS ONE · 2011 · 1.2K citations · Full text
Correlated mutations and residue contacts in proteins
Ulrike Göbel, Chris Sander, Reinhard Schneider et al. · Proteins Structure Function and Bioinformatics · 1994 · 891 citations · Full text