MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)

References

Page 1

	Year	Citations
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Ben Langmead, Cole Trapnell, Mihai Pop, Genome biology	2009	22.5K
Identification of common molecular subsequences Temple F. Smith, Michael S. Waterman Journal of Molecular Biology Sequence MotifFunctional GenomicsNatural SciencesCommon Molecular SubsequencesSequence Analysis	1981	10K
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM Heng Li arXiv (Cornell University)	2014	5.8K
SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler Ruibang Luo, Binghang Liu, Yinlong Xie, GigaScience	2012	5.5K
Mapping short DNA sequencing reads and calling variants using mapping quality scores Heng Li, Jue Ruan, Richard Durbin Genome Research	2008	2.7K
An improved algorithm for matching biological sequences Osamu Gotoh Journal of Molecular Biology BiologyPhylogeneticsMolecular EcologyNatural SciencesSequence Analysis	1982	1.7K
The GEM mapper: fast, accurate and versatile alignment by filtration Santiago Marco‐Sola, Michael Sammeth, Roderic Guigó, Nature Methods Computational ScienceEngineeringData ScienceNatural SciencesGem Mapper	2012	588
SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu, PLoS ONE EngineeringGpu BenchmarkingGeneticsComputer ArchitectureMolecular Biology	2013	429
SeqAn An efficient, generic C++ library for sequence analysis Andreas Gogol‐Döring, David Weese, Tobias Rausch, BMC Bioinformatics	2008	350
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform Yongchao Liu, Bertil Schmidt, Douglas L. Maskell Bioinformatics	2012	163

Page 1