MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Dinghua Li, Chi-Man Liu, Ruibang Luo, +2

Bioinformatics

EngineeringMolecular BiologySoil DataGenomicsSoil Metagenomics +15

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Dinghua Li, Chi-Man Liu, Ruibang Luo, +2

arXiv (Cornell University)

EngineeringMolecular BiologyGenomicsSoil MetagenomicsUltra-fast Single-node Solution +18

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu, +14

PLoS ONE

EngineeringGpu BenchmarkingGeneticsComputer ArchitectureMolecular Biology +23

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads

Chi-Man Liu, Thomas K. F. Wong, Edward Wu, +9

Bioinformatics

Cluster ComputingEngineeringGeneticsComputer ArchitectureMolecular Biology +25

Exploring the limit of using a deep neural network on pileup data for germline variant calling

Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, +4

Nature Machine Intelligence

Artificial IntelligenceEngineeringMachine LearningData ScienceMachine Learning Model +8

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC)

Ruibang Luo, Jeanno Cheung, Edward Wu, +13

BMC Bioinformatics

Correction: SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu, +14

PLoS ONE

GPU-Accelerated BWT Construction for Large Collection of Short Reads

Chi-Man Liu, Ruibang Luo, Tak‐Wah Lam

arXiv (Cornell University)

Cluster ComputingEngineeringGeneticsComputer ArchitectureMolecular Biology +24

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU

Ruibang Luo, Yiu-Lun Wong, Wai-Chun Law, +4

PeerJ

GeneticsMolecular BiologyGenomicsHigh Throughput SequencingGenetic Medicine +23

BASE: a practical de novo assembler for large genomes using long NGS reads

Binghang Liu, Chi-Man Liu, Dinghua Li, +5

BMC Genomics