Concepedia

Transcript Boundary Identification

Transcript Boundary Identification is the computational process of determining the precise start and end sites of transcriptional units within genomic sequences, distinguished from related gene prediction tasks by its focus on empirically delineating the boundaries of expressed RNA molecules based on experimental transcriptomic evidence.

16

Publications

5.9K

Citations

302

Authors

94

Institutions

Publications per year

2017–2026

3

Parents

Publications

16

The Transcriptional Landscape of the Mammalian Genome

Piero Carninci, Takeya Kasukawa, Shintaro Katayama et al. · Science · 2005 · 3.6K citations

, , +17

A high-resolution map of transcription in the yeast genome

Lior David, Wolfgang Huber, Marina Granovskaia et al. · Proceedings of the National Academy of Sciences · 2006 · 704 citations

, , +14

LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs

Sebastian Will, Tejal Joshi, Ivo L. Hofacker et al. · RNA · 2012 · 413 citations · Full text

, , +16

Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs

Zhengyan Kan, Eric C. Rouchka, Warren Gish et al. · Genome Research · 2001 · 403 citations · Full text

, , +17

Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali, Julien Lagarde, Philipp Kapranov et al. · PLoS ONE · 2012 · 235 citations · Full text

, , +13

1–5 of 16

Authors

302

  1. WH
    Wolfgang Huber

    European Molecular Biology Laboratory, Germany

    2 publications · 857 citations

    2

    h-index

  2. LM
    Lars M. Steinmetz

    European Molecular Biology Laboratory, Germany

    2 publications · 857 citations

    2

    h-index

  3. TG
    T Gingeras

    Cold Spring Harbor Laboratory, United States

    2 publications · 3.8K citations

    2

    h-index

  4. JT
    Joern Toedling

    Charité - Universitätsmedizin Berlin, Germany

    2 publications · 857 citations

    2

    h-index

  5. JM
    Jennifer McDowall

    Wellcome Sanger Institute, United Kingdom

    1 publications · 18 citations

    1

    h-index

1–5 of 302

Institutions

94

  1. Universitat Pompeu Fabra

    Barcelona, Spain

    2 h-index

    12 publications

    2.4K citations

  2. European Bioinformatics Institute

    Cambridge, United Kingdom

    2 h-index

    5 publications

    2.4K citations

  3. Wellcome Sanger Institute

    Cambridge, United Kingdom

    2 h-index

    10 publications

    1.7K citations

  4. Technical University of Denmark

    Kongens Lyngby, Denmark

    2 h-index

    5 publications

    489 citations

  5. University of Oxford

    Oxford, United Kingdom

    2 h-index

    3 publications

    3.6K citations

  6. Stanford University

    Stanford, United States

    2 h-index

    9 publications

    3.9K citations

  7. University of Washington

    Seattle, United States

    2 h-index

    6 publications

    470 citations

  8. Max Planck Institute for Mathematics in the Sciences

    Leipzig, Germany

    1 h-index

    1 publications

    413 citations

1–8 of 94

Venues

  1. Nucleic Acids Research

    4 publications · 116 citations

    4

    h-index

  2. Bioinformatics

    2 publications · 200 citations

    2

    h-index

  3. BMC Bioinformatics

    1 publications · 83 citations

    1

    h-index

  4. RNA

    1 publications · 413 citations

    1

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 704 citations

    1

    h-index

1–5