Concepedia

Transcript Alignment

Transcript Alignment is a computational method in transcript sequence analysis that establishes positional correspondences between a transcript sequence and a reference genome or transcriptome to infer structural and functional relationships.

80

Publications

34.3K

Citations

435

Authors

189

Institutions

Publications per year

2017–2026

27

Parents

Publications

80

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 9.1K citations · Full text

, , +16

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Brian Haas · Nucleic Acids Research · 2003 · 2.5K citations · Full text

, , +17

Infernal 1.0: inference of RNA alignments

Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy · Bioinformatics · 2009 · 1.5K citations · Full text

, , +12

A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence

Liliana Florea, George Hartzell, Zheng Zhang et al. · Genome Research · 1998 · 728 citations · Full text

, , +14

1–5 of 80

Authors

435

  1. RP
    Rob Patro

    Stony Brook University, United States

    5 publications · 470 citations

    5

    h-index

  2. HS
    Hirak Sarkar

    Harvard University, United States

    4 publications · 368 citations

    4

    h-index

  3. CK
    Carl Kingsford

    Carnegie Mellon University, United States

    3 publications · 335 citations

    3

    h-index

  4. GR
    Gregory R. Grant

    University of Pennsylvania, United States

    3 publications · 1.2K citations

    3

    h-index

  5. AS
    Avi Srivastava

    Stony Brook University, United States

    3 publications · 355 citations

    3

    h-index

1–5 of 435

Institutions

189

  1. University of Pennsylvania

    Philadelphia, United States

    6 h-index

    25 publications

    7K citations

  2. Stony Brook University

    Stony Brook, United States

    5 h-index

    14 publications

    1.1K citations

  3. University of California, Berkeley

    Berkeley, United States

    4 h-index

    7 publications

    23K citations

  4. Carnegie Mellon University

    Pittsburgh, United States

    4 h-index

    5 publications

    9.5K citations

  5. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    4 h-index

    9 publications

    773 citations

  6. University of Maryland, College Park

    College Park, United States

    3 h-index

    8 publications

    14.6K citations

  7. Johns Hopkins University

    Baltimore, United States

    3 h-index

    9 publications

    41.1K citations

  8. National Institutes of Health

    Bethesda, United States

    3 h-index

    12 publications

    2.7K citations

1–8 of 189

Venues

  1. Bioinformatics

    11 publications · 2.4K citations

    11

    h-index

  2. Nucleic Acids Research

    9 publications · 3.6K citations

    9

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 141 citations

    6

    h-index

  4. BMC Bioinformatics

    4 publications · 506 citations

    4

    h-index

  5. Nature Methods

    3 publications · 891 citations

    3

    h-index

1–5