Concepedia

Tetranucleotide Frequency

Tetranucleotide Frequency is a genomic signature defined as the relative abundance of all possible combinations of four consecutive nucleotides in a DNA sequence, used to capture species-specific biases in oligonucleotide composition for applications in metagenome binning.

63

Publications

6.8K

Citations

219

Authors

141

Institutions

Publications per year

2017–2026

10

Variants

Tetranucleotide Frequencies

Parents

Publications

63

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

Dongwan Kang, Jeff Froula, Rob Egan et al. · PeerJ · 2015 · 2.1K citations · Full text

, , +17

Community-wide analysis of microbial genome sequence signatures

Gregory J. Dick, Anders F. Andersson, Brett J. Baker et al. · Genome biology · 2009 · 577 citations · Full text

, , +17

Compositional biases of bacterial genomes and evolutionary implications

Samuel Karlin, Jan Mrázek, Allan Campbell · Journal of Bacteriology · 1997 · 448 citations · Full text

, , +15

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

Hanno Teeling, Jost Waldmann, Thierry Lombardot et al. · BMC Bioinformatics · 2004 · 398 citations · Full text

, , +15

Application of tetranucleotide frequencies for the assignment of genomic fragments

Hanno Teeling, Anke Meyerdierks, Margarete Bauer et al. · Environmental Microbiology · 2004 · 376 citations

, , +13

1–5 of 63

Authors

219

  1. SH
    Saman Halgamuge

    The University of Melbourne, Australia

    3 publications · 107 citations

    3

    h-index

  2. MB
    Margarete Bauer

    Max Planck Institute for Marine Microbiology, Germany

    2 publications · 774 citations

    2

    h-index

  3. ST
    Sen‐Lin Tang

    Biodiversity Research Center, Academia Sinica, Taiwan

    2 publications · 85 citations

    2

    h-index

  4. SK
    Shigehiko Kanaya

    Nara Institute of Science and Technology, Japan

    2 publications · 413 citations

    2

    h-index

  5. ES
    Eystein Skjerve

    Norwegian University of Life Sciences, Norway

    2 publications · 92 citations

    2

    h-index

1–5 of 219

Institutions

141

  1. The University of Melbourne

    Melbourne, Australia

    3 h-index

    7 publications

    275 citations

  2. Stanford University

    Stanford, United States

    2 h-index

    5 publications

    1.4K citations

  3. Yamagata University

    Yamagata, Japan

    2 h-index

    7 publications

    1.8K citations

  4. Biodiversity Research Center, Academia Sinica

    Taipei, Taiwan

    2 h-index

    3 publications

    109 citations

  5. Nara Institute of Science and Technology

    Ikoma, Japan

    2 h-index

    7 publications

    1.8K citations

  6. University of Maine

    Orono, United States

    2 h-index

    2 publications

    55 citations

  7. University of Georgia

    Athens, United States

    2 h-index

    7 publications

    270 citations

  8. National Institute of Genetics

    Mishima, Japan

    2 h-index

    8 publications

    1.9K citations

1–8 of 141

Venues

  1. PLoS ONE

    7 publications · 248 citations

    7

    h-index

  2. Nucleic Acids Research

    3 publications · 84 citations

    3

    h-index

  3. BMC Bioinformatics

    3 publications · 438 citations

    3

    h-index

  4. Applied and Environmental Microbiology

    AEM · 2 publications · 76 citations

    2

    h-index

  5. Human Molecular Genetics

    2 publications · 53 citations

    2

    h-index

1–5