Concepedia

Template-based Docking

Template-Based Docking is a computational method in protein-protein interaction modeling that predicts the three-dimensional structure of a protein complex by leveraging known structural complexes as templates, distinguishing itself from other docking approaches through its reliance on evolutionary and structural homology to derive spatial constraints.

67

Publications

8.5K

Citations

301

Authors

152

Institutions

Publications per year

2017–2026

33

Parents

Publications

67

CB-Dock2: improved protein–ligand blind docking by integrating cavity detection, docking and homologous template fitting

Yang Liu, Xiaocong Yang, Jianhong Gan et al. · Nucleic Acids Research · 2022 · 1.8K citations · Full text

, , +17

Template-based protein structure modeling using the RaptorX web server

Morten Källberg, Haipeng Wang, Sheng Wang et al. · Nature Protocols · 2012 · 1.7K citations · Full text

, , +11

HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy

Yumeng Yan, Di Zhang, Pei Zhou et al. · Nucleic Acids Research · 2017 · 1.4K citations · Full text

, , +17

RaptorX server: A Resource for Template-Based Protein Structure Modeling

Morten Källberg, Gohar Margaryan, Sheng Wang et al. · Methods in molecular biology · 2014 · 325 citations

, , +11

GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization

Hasup Lee, Lim Heo, Myeong Sup Lee et al. · Nucleic Acids Research · 2015 · 324 citations · Full text

, , +17

1–5 of 67

Authors

301

  1. PJ
    Petras J. Kundrotas

    University of Kansas, United States

    13 publications · 780 citations

    13

    h-index

  2. IA
    Ilya A. Vakser

    University of Kansas, United States

    12 publications · 756 citations

    12

    h-index

  3. IA
    Ivan Anishchenko

    University of Washington, United States

    7 publications · 303 citations

    7

    h-index

  4. DK
    Dima Kozakov

    Boston University, United States

    6 publications · 260 citations

    6

    h-index

  5. SV
    Sándor Vajda

    Boston University, United States

    5 publications · 247 citations

    5

    h-index

1–5 of 301

Institutions

152

  1. University of Kansas

    Lawrence, United States

    13 h-index

    36 publications

    2K citations

  2. Stony Brook University

    Stony Brook, United States

    5 h-index

    30 publications

    508 citations

  3. Boston University

    Boston, United States

    5 h-index

    24 publications

    1.6K citations

  4. Innopolis University

    Innopolis, Russia

    4 h-index

    6 publications

    130 citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    23 publications

    2K citations

  6. Seoul National University

    Seoul, South Korea

    4 h-index

    17 publications

    2.6K citations

  7. Utrecht University

    Utrecht, The Netherlands

    3 h-index

    25 publications

    2.4K citations

  8. Huazhong University of Science and Technology

    Wuhan, China

    3 h-index

    11 publications

    8K citations

1–8 of 152

Venues

  1. Proteins Structure Function and Bioinformatics

    20 publications · 884 citations

    18

    h-index

  2. Nucleic Acids Research

    8 publications · 3.8K citations

    8

    h-index

  3. Bioinformatics

    5 publications · 152 citations

    5

    h-index

  4. PLoS ONE

    4 publications · 226 citations

    4

    h-index

  5. Journal of Chemical Information and Modeling

    JCIM · 4 publications · 221 citations

    4

    h-index

1–5