Concepedia

Taxonomic Assignment Algorithms

Taxonomic Assignment Algorithms is a computational methodology that systematically classifies microbial sequences into taxonomic hierarchies by comparing query 16S ribosomal RNA gene sequences against reference databases using sequence similarity, probabilistic models, or machine learning techniques to infer phylogenetic or taxonomic identity.

326

Publications

59.7K

Citations

1.6K

Authors

727

Institutions

Publications per year

2017–2026

162

Parents

Publications

326

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Qiong Wang, George M Garrity, James M. Tiedje et al. · Applied and Environmental Microbiology · 2007 · 20.5K citations · Full text

, , +17

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

Nicholas A. Bokulich, Benjamin D. Kaehler, Jai Ram Rideout et al. · Microbiome · 2018 · 6.1K citations · Full text

, , +17

<i>microeco</i>: an R package for data mining in microbial community ecology

Chi Liu, Yaoming Cui, Xiangzhen Li et al. · FEMS Microbiology Ecology · 2020 · 1.6K citations

, , +13

A unified catalog of 204,938 reference genomes from the human gut microbiome

Alexandre Almeida, Stephen Nayfach, Miguel Boland et al. · Nature Biotechnology · 2020 · 1.4K citations · Full text

, , +17

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei‐Yuan Qian · PLoS ONE · 2009 · 1.3K citations · Full text

, , +15

1–5 of 326

Authors

1.6K

  1. MG
    Michael Goodfellow

    Newcastle University, United Kingdom

    10 publications · 480 citations

    10

    h-index

  2. SL
    Sarah L. Westcott

    University of Michigan, United States

    5 publications · 1.5K citations

    5

    h-index

  3. PD
    Patrick D. Schloss

    University of Michigan, United States

    5 publications · 1.5K citations

    5

    h-index

  4. TM
    Teresita M. Porter

    University of Guelph, Canada

    5 publications · 384 citations

    5

    h-index

  5. AB
    Agnès Bouchez

    Université Savoie Mont Blanc, France

    4 publications · 247 citations

    4

    h-index

1–5 of 1.6K

Institutions

727

  1. Centre National de la Recherche Scientifique

    Paris, France

    15 h-index

    58 publications

    3K citations

  2. Institut de Recherche pour le Développement

    Marseille, France

    11 h-index

    34 publications

    2.2K citations

  3. Newcastle University

    Newcastle upon Tyne, United Kingdom

    10 h-index

    24 publications

    1.6K citations

  4. Chinese Academy of Sciences

    Beijing, China

    9 h-index

    17 publications

    3.7K citations

  5. University of Guelph

    Guelph, Canada

    8 h-index

    47 publications

    4.9K citations

  6. University of Helsinki

    Helsinki, Finland

    7 h-index

    31 publications

    2.9K citations

  7. Institut Pasteur

    Paris, France

    6 h-index

    18 publications

    1.9K citations

  8. Université de Montpellier

    Montpellier, France

    6 h-index

    17 publications

    970 citations

1–8 of 727

Venues

  1. PLoS ONE

    30 publications · 3.9K citations

    23

    h-index

  2. Molecular Ecology Resources

    24 publications · 2.4K citations

    22

    h-index

  3. Bioinformatics

    18 publications · 1.1K citations

    14

    h-index

  4. 13

    h-index

  5. BMC Bioinformatics

    13 publications · 926 citations

    13

    h-index

1–5