Concepedia

Symmetry-aware Docking

Symmetry-Aware Docking is a computational docking method that incorporates molecular symmetry constraints during the prediction of protein complex assembly to ensure structurally consistent and biologically plausible quaternary structure configurations.

16

Publications

4.7K

Citations

75

Authors

38

Institutions

Publications per year

2017–2026

7

Parents

Publications

16

PatchDock and SymmDock: servers for rigid and symmetric docking

Dina Schneidman‐Duhovny, Yoel Inbar, Ruth Nussinov et al. · Nucleic Acids Research · 2005 · 3.1K citations · Full text

, , +17

DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism

Eric W. Bell, Yang Zhang · Journal of Cheminformatics · 2019 · 430 citations · Full text

, , +17

De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy

Po‐Ssu Huang, Kaspar Feldmeier, Fabio Parmeggiani et al. · Nature Chemical Biology · 2015 · 268 citations · Full text

, , +14

Molecular Docking of Intercalators and Groove-Binders to Nucleic Acids Using Autodock and Surflex

Patrick A. Holt, Jonathan B. Chaires, John O. Trent · Journal of Chemical Information and Modeling · 2008 · 223 citations · Full text

, , +17

M-ZDOCK: a grid-based approach for Cn symmetric multimer docking

Brian G. Pierce, Wei Tong, Zhiping Weng · Computer applications in the biosciences · 2004 · 212 citations · Full text

, , +17

1–5 of 16

Authors

75

  1. DB
    David Baker

    University of Washington, United States

    4 publications · 336 citations

    4

    h-index

  2. NP
    Neil P. King

    University of Washington, United States

    2 publications · 48 citations

    2

    h-index

  3. WS
    William Sheffler

    University of Washington, United States

    2 publications · 48 citations

    2

    h-index

  4. YH
    Yang Hsia

    University of Washington, United States

    2 publications · 48 citations

    2

    h-index

  5. QM
    Quinton M. Dowling

    University of Washington, United States

    2 publications · 48 citations

    2

    h-index

1–5 of 75

Institutions

38

  1. University of Washington

    Seattle, United States

    4 h-index

    37 publications

    1.6K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    5 publications

    356 citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    4 publications

    44 citations

  4. University of Bonn

    Bonn, Germany

    2 h-index

    4 publications

    96 citations

  5. Tel Aviv University

    Tel Aviv, Israel

    2 h-index

    8 publications

    6.3K citations

  6. Science Applications International Corporation (United States)

    McLean, United States

    2 h-index

    2 publications

    3.1K citations

  7. Lawrence Berkeley National Laboratory

    Berkeley, United States

    1 h-index

    1 publications

    20 citations

  8. Laboratoire de Chimie Théorique

    Paris, France

    1 h-index

    3 publications

    33 citations

1–8 of 38

Venues

  1. Journal of Chemical Information and Modeling

    JCIM · 2 publications · 329 citations

    2

    h-index

  2. Nucleic Acids Research

    2 publications · 3.2K citations

    2

    h-index

  3. 2

    h-index

  4. Molecular & Cellular Proteomics

    MCP · 1 publications · 122 citations

    1

    h-index

  5. PLoS Computational Biology

    1 publications · 36 citations

    1

    h-index

1–5