Concepedia

Single-cell Quality Control

Single-Cell Quality Control is a computational and statistical preprocessing framework in single-cell omics analysis that evaluates cell- and library-level quality metrics (such as read depth, gene complexity, and mitochondrial content) to identify and exclude low-quality or artifactual measurements while preserving biologically meaningful variation for downstream inference.

152

Publications

18.1K

Citations

1K

Authors

372

Institutions

Publications per year

2017–2026

113

Variants

Quality Control For Single-cell DataQuality Control In Single-cell DataSingle Cell Quality ControlSingle-cell Data Quality Control

Parents

Children

Publications

152

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun et al. · Bioinformatics · 2016 · 2.1K citations · Full text

, , +15

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

Matthew D. Young, Sam Behjati · GigaScience · 2020 · 1.7K citations · Full text

, , +16

A Single-Cell Transcriptome Atlas of the Human Pancreas

Mauro J. Muraro, Gitanjali Dharmadhikari, Dominic Grün et al. · Cell Systems · 2016 · 1.5K citations · Full text

, , +17

Doublet identification in single-cell sequencing data using scDblFinder

Pierre‐Luc Germain, Aaron T. L. Lun, Will Macnair et al. · F1000Research · 2021 · 919 citations · Full text

, , +16

Classification of low quality cells from single-cell RNA-seq data

Tomislav Ilicic, Jong Kim, Aleksandra A. Kolodziejczyk et al. · Genome biology · 2016 · 797 citations · Full text

, , +17

1–5 of 152

Authors

1K

  1. MD
    Mark D. Robinson

    University of Zurich, Switzerland

    5 publications · 1.6K citations

    5

    h-index

  2. AT
    Aaron T. L. Lun

    University of Cambridge, United Kingdom

    4 publications · 3.6K citations

    4

    h-index

  3. DJ
    Davis J. McCarthy

    St Vincents Institute of Medical Research, Australia

    4 publications · 3.4K citations

    4

    h-index

  4. KS
    Ken S. Lau

    Vanderbilt University, United States

    3 publications · 99 citations

    3

    h-index

  5. CM
    Catherine M. Grgicak

    Boston University, United States

    3 publications · 45 citations

    3

    h-index

1–5 of 1K

Institutions

372

  1. Harvard University

    Cambridge, United States

    9 h-index

    35 publications

    3.3K citations

  2. University of Cambridge

    Cambridge, United Kingdom

    8 h-index

    23 publications

    10.3K citations

  3. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    7 h-index

    15 publications

    3.5K citations

  4. Howard Hughes Medical Institute

    Chevy Chase, United States

    6 h-index

    11 publications

    2.5K citations

  5. European Bioinformatics Institute

    Cambridge, United Kingdom

    6 h-index

    17 publications

    11.4K citations

  6. Wellcome Sanger Institute

    Cambridge, United Kingdom

    6 h-index

    24 publications

    14.8K citations

  7. University of Zurich

    Zurich, Switzerland

    6 h-index

    13 publications

    3.3K citations

  8. ETH Zurich

    Zurich, Switzerland

    5 h-index

    7 publications

    2.3K citations

1–8 of 372

Venues

  1. Bioinformatics

    11 publications · 3K citations

    11

    h-index

  2. Scientific Reports

    8 publications · 387 citations

    8

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 299 citations

    8

    h-index

  4. Cytometry Part A

    7 publications · 340 citations

    7

    h-index

  5. Genome biology

    7 publications · 1.8K citations

    7

    h-index

1–5