Concepedia

Single-cell Network Inference

Single-Cell Network Inference is a computational methodology that distinguishes itself by reconstructing gene regulatory or cellular interaction networks from high-dimensional single-cell omics data, enabling the characterization of regulatory dynamics and functional relationships at individual cell resolution.

156

Publications

31.4K

Citations

818

Authors

312

Institutions

Publications per year

2017–2026

138

Parents

Publications

156

SCANPY: large-scale single-cell gene expression data analysis

F. Alexander Wolf, Philipp Angerer, Fabian J. Theis · Genome biology · 2018 · 9.3K citations · Full text

, , +15

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.9K citations · Full text

, , +17

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

David van Dijk, Roshan Sharma, Juozas Nainys et al. · Cell · 2018 · 1.9K citations · Full text

, , +9

scGPT: toward building a foundation model for single-cell multi-omics using generative AI

Haotian Cui, Hassaan Maan, Kuan Pang et al. · Nature Methods · 2024 · 1K citations

, , +14

Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

Aditya Pratapa, Amogh P. Jalihal, Jeffrey Law et al. · Nature Methods · 2020 · 819 citations · Full text

, , +14

1–5 of 156

Authors

818

  1. QN
    Qing Nie

    University of California, Irvine, United States

    5 publications · 360 citations

    5

    h-index

  2. RC
    Robrecht Cannoodt

    VIB-UGent Center for Inflammation Research, Belgium

    4 publications · 269 citations

    4

    h-index

  3. YS
    Yvan Saeys

    Ghent University, Belgium

    4 publications · 269 citations

    4

    h-index

  4. OG
    Olivier Gandrillon

    Université Claude Bernard Lyon 1, France

    4 publications · 451 citations

    4

    h-index

  5. WS
    Wouter Saelens

    Ghent University, Belgium

    4 publications · 269 citations

    4

    h-index

1–5 of 818

Institutions

312

  1. Inserm

    Paris, France

    8 h-index

    29 publications

    4.2K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    7 h-index

    21 publications

    1.5K citations

  3. University of Cambridge

    Cambridge, United Kingdom

    6 h-index

    26 publications

    4.3K citations

  4. ETH Zurich

    Zurich, Switzerland

    6 h-index

    14 publications

    878 citations

  5. Chinese Academy of Sciences

    Beijing, China

    6 h-index

    20 publications

    1.6K citations

  6. University of California, Irvine

    Irvine, United States

    6 h-index

    24 publications

    1.9K citations

  7. École Normale Supérieure de Lyon

    Lyon, France

    5 h-index

    14 publications

    1.1K citations

  8. Shandong University

    Jinan, China

    5 h-index

    19 publications

    1.5K citations

1–8 of 312

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 22 publications · 828 citations

    14

    h-index

  2. Bioinformatics

    15 publications · 1.6K citations

    13

    h-index

  3. Briefings in Bioinformatics

    10 publications · 424 citations

    10

    h-index

  4. Nucleic Acids Research

    11 publications · 1.1K citations

    10

    h-index

  5. PLoS Computational Biology

    4 publications · 96 citations

    4

    h-index

1–5