Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje, Wouter Meuleman, Jason Ernst et al. · Nature · 2015 · 6.9K citations · Full text

Bioinformatics, Chromatin, Genome-wide Association Study +14

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba et al. · Nature Methods · 2013 · 6.8K citations · Full text

Chromatin, Native Chromatin, Chromatin Remodeling +15

Objective Criteria for the Evaluation of Clustering Methods

Journal of the American Statistical Association · 1971 · 5.8K citations · Full text

FIMO: scanning for occurrences of a given motif

Charles E. Grant, Timothy L. Bailey, William Stafford Noble · Bioinformatics · 2011 · 4.7K citations · Full text

The emerging field of signal processing on graphs: Extending high-dimensional data analysis to networks and other irregular domains

David I Shuman, Sunil K. Narang, Pascal Frossard et al. · IEEE Signal Processing Magazine · 2013 · 4.3K citations · Full text