Concepedia

Sequence-based Surveillance

Sequence-Based Surveillance is a molecular surveillance methodology that distinguishes itself by relying on the systematic acquisition and analysis of pathogen nucleic acid sequences to monitor genetic variation, track transmission dynamics, and inform public health interventions.

46

Publications

3K

Citations

761

Authors

250

Institutions

Publications per year

2017–2026

35

Parents

Publications

46

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart L. Stein et al. · Nature Medicine · 2020 · 354 citations · Full text

, , +14

Preliminary Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food — Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2016–2019

Danielle M. Tack, Logan Ray, Patricia M. Griffin et al. · MMWR Morbidity and Mortality Weekly Report · 2020 · 312 citations · Full text

, , +17

Global Distribution of Measles Genotypes and Measles Molecular Epidemiology

Paul A. Rota, Kevin Brown, Annette Mankertz et al. · The Journal of Infectious Diseases · 2011 · 284 citations · Full text

, , +17

A pilot study of rapid benchtop sequencing of <i>Staphylococcus aureus</i> and <i>Clostridium difficile</i> for outbreak detection and surveillance

David W. Eyre, Tanya Golubchik, N Claire Gordon et al. · BMJ Open · 2012 · 246 citations · Full text

, , +17

Mobile real-time surveillance of Zika virus in Brazil

Nuno R. Faria, Éster Cerdeira Sabino, Márcio Roberto Teixeira Nunes et al. · Genome Medicine · 2016 · 217 citations · Full text

, , +15

1–5 of 46

Authors

761

  1. EC
    Edward C. Holmes

    The University of Sydney, Australia

    6 publications · 368 citations

    6

    h-index

  2. AA
    Alexander A. Martínez

    Instituto Conmemorativo Gorgas de Estudios de la Salud, Panama

    2 publications · 105 citations

    2

    h-index

  3. AR
    Andrew Rambaut

    University of Edinburgh, United Kingdom

    2 publications · 480 citations

    2

    h-index

  4. OM
    Ousmane M. Diop

    Institut Pasteur de Dakar, Senegal

    2 publications · 60 citations

    2

    h-index

  5. SJ
    Sarah Jefferies

    Addenbrooke's Hospital, United Kingdom

    2 publications · 174 citations

    2

    h-index

1–5 of 761

Institutions

250

  1. The University of Sydney

    Sydney, Australia

    5 h-index

    8 publications

    422 citations

  2. University of Oxford

    Oxford, United Kingdom

    5 h-index

    27 publications

    3.8K citations

  3. Fundação Oswaldo Cruz

    Rio de Janeiro, Brazil

    4 h-index

    44 publications

    3K citations

  4. University of Edinburgh

    Edinburgh, United Kingdom

    4 h-index

    5 publications

    1K citations

  5. Centers for Disease Control and Prevention

    Atlanta, United States

    3 h-index

    29 publications

    1.2K citations

  6. The University of Melbourne

    Melbourne, Australia

    3 h-index

    13 publications

    988 citations

  7. Peter Doherty Institute

    Melbourne, Australia

    3 h-index

    12 publications

    914 citations

  8. Public Health England

    London, United Kingdom

    3 h-index

    6 publications

    323 citations

1–8 of 250

Venues

  1. medRxiv

    Repository · 3 publications · 60 citations

    3

    h-index

  2. Nature Communications

    3 publications · 236 citations

    3

    h-index

  3. International Journal of Infectious Diseases

    IJID · 2 publications · 109 citations

    2

    h-index

  4. Viruses

    2 publications · 54 citations

    2

    h-index

  5. MMWR Morbidity and Mortality Weekly Report

    2 publications · 343 citations

    2

    h-index

1–5