Concepedia

Sequence Scoring

Sequence Scoring is a computational method within the framework of Profile Hidden Markov Models that quantifies the likelihood of a given biological sequence being generated by the model, thereby distinguishing it from arbitrary sequences through position-specific emission and transition probabilities.

57

Publications

6.5K

Citations

132

Authors

86

Institutions

Publications per year

2017–2026

1

Parents

Publications

57

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.

Samuel Karlin, Stephen F. Altschul · Proceedings of the National Academy of Sciences · 1990 · 1.6K citations

, , +13

The PANTHER database of protein families, subfamilies, functions and pathways

Huaiyu Mi · Nucleic Acids Research · 2004 · 812 citations · Full text

, , +13

Applications and statistics for multiple high-scoring segments in molecular sequences.

Samuel Karlin, Stephen F. Altschul · Proceedings of the National Academy of Sciences · 1993 · 370 citations

, , +13

Evaluation of Gene-Finding Programs on Mammalian Sequences

Sanja Rogić, Alan K. Mackworth, B. F. Francis Ouellette · Genome Research · 2001 · 272 citations · Full text

, , +10

Maximum Discrimination Hidden Markov Models of Sequence Consensus

Sean R. Eddy, Graeme Mitchison, Richard Durbin · Journal of Computational Biology · 1995 · 249 citations

, , +16

1–5 of 57

Authors

132

  1. SK
    Samuel Karlin

    Stanford University, United States

    6 publications · 2.2K citations

    6

    h-index

  2. RH
    Richard Hughey

    University of California, Santa Cruz, United States

    3 publications · 172 citations

    3

    h-index

  3. AD
    Amir Dembo

    Stanford University, United States

    3 publications · 269 citations

    3

    h-index

  4. RM
    Richard Mott

    Centre for Human Genetics, United Kingdom

    2 publications · 186 citations

    2

    h-index

  5. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    2 publications · 135 citations

    2

    h-index

1–5 of 132

Institutions

86

  1. Stanford University

    Stanford, United States

    7 h-index

    12 publications

    4.3K citations

  2. University of California, Santa Cruz

    Santa Cruz, United States

    5 h-index

    11 publications

    1.3K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    8 publications

    367 citations

  4. National Center for Biotechnology Information

    Bethesda, United States

    2 h-index

    2 publications

    1.9K citations

  5. Johns Hopkins University

    Baltimore, United States

    2 h-index

    2 publications

    135 citations

  6. Karolinska Institutet

    Stockholm, Sweden

    2 h-index

    4 publications

    204 citations

  7. Rutgers, The State University of New Jersey

    New Brunswick, United States

    2 h-index

    5 publications

    284 citations

  8. Uppsala University

    Uppsala, Sweden

    2 h-index

    6 publications

    357 citations

1–8 of 86

Venues

  1. Bioinformatics

    11 publications · 733 citations

    11

    h-index

  2. BMC Bioinformatics

    6 publications · 295 citations

    6

    h-index

  3. Journal of Computational Biology

    4 publications · 425 citations

    4

    h-index

  4. Nucleic Acids Research

    3 publications · 948 citations

    3

    h-index

  5. Genome Research

    GR · 3 publications · 392 citations

    3

    h-index

1–5