Concepedia

Sequence Filtering

Sequence Filtering is a computational method that distinguishes low-quality or artifact-containing sequences from high-quality ones by applying specific thresholds or algorithms to raw sequencing data, thereby ensuring downstream analyses are based on reliable biological signal.

111

Publications

19.5K

Citations

424

Authors

223

Institutions

Publications per year

2017–2026

38

Parents

Publications

111

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

Nicholas A. Bokulich, Sathish Subramanian, Jeremiah J. Faith et al. · Nature Methods · 2012 · 4.4K citations · Full text

, , +10

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain · PLoS ONE · 2012 · 3K citations · Full text

, , +14

The ENCODE Blacklist: Identification of Problematic Regions of the Genome

Haley M. Amemiya, Anshul Kundaje, Alan P. Boyle · Scientific Reports · 2019 · 2.1K citations · Full text

, , +12

Manipulation of FASTQ data with Galaxy

Daniel Blankenberg, Assaf Gordon, Gregory Von Kuster et al. · Bioinformatics · 2010 · 711 citations · Full text

, , +10

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

André E. Minoche, Juliane C. Dohm, Heinz Himmelbauer · Genome biology · 2011 · 651 citations · Full text

, , +17

1–5 of 111

Authors

424

  1. PP
    P. P. Vaidyanathan

    California Institute of Technology, United States

    3 publications · 236 citations

    3

    h-index

  2. NA
    Nicholas A. Bokulich

    Northern Arizona University, United States

    2 publications · 4.5K citations

    2

    h-index

  3. HJ
    Hugh J. MacIsaac

    University of Windsor, Canada

    2 publications · 189 citations

    2

    h-index

  4. PP
    Pierre Peterlongo

    Institut de Recherche en Informatique et Systèmes Aléatoires, France

    2 publications · 64 citations

    2

    h-index

  5. AA
    Alejandro A. Schäffer

    National Institutes of Health, United States

    2 publications · 590 citations

    2

    h-index

1–5 of 424

Institutions

223

  1. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    12 publications

    4.2K citations

  2. California Institute of Technology

    Pasadena, United States

    3 h-index

    4 publications

    332 citations

  3. National Center for Biotechnology Information

    Bethesda, United States

    3 h-index

    12 publications

    2.7K citations

  4. Max Planck Institute for Molecular Genetics

    Berlin, Germany

    3 h-index

    4 publications

    1.3K citations

  5. Tel Aviv University

    Tel Aviv, Israel

    3 h-index

    5 publications

    157 citations

  6. Chinese Academy of Sciences

    Beijing, China

    3 h-index

    13 publications

    2K citations

  7. Harvard University

    Cambridge, United States

    3 h-index

    6 publications

    425 citations

  8. National Institutes of Health

    Bethesda, United States

    3 h-index

    16 publications

    2.5K citations

1–8 of 223

Venues

  1. Bioinformatics

    12 publications · 1.7K citations

    12

    h-index

  2. BMC Bioinformatics

    12 publications · 676 citations

    11

    h-index

  3. Journal of Computational Biology

    6 publications · 762 citations

    6

    h-index

  4. PLoS ONE

    4 publications · 3.2K citations

    4

    h-index

  5. Frontiers in Microbiology

    3 publications · 113 citations

    3

    h-index

1–5