Concepedia

Secondary Structure Alignment

Secondary Structure Alignment is a computational method that aligns RNA or protein sequences based on their predicted or experimentally determined secondary structural elements, such as helices, loops, and stems, thereby preserving structural homologies that may not be evident from primary sequence similarity alone.

143

Publications

14.6K

Citations

453

Authors

238

Institutions

Publications per year

2017–2026

12

Parents

Publications

143

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

Eugene Krissinel, K. Henrick · Acta Crystallographica Section D Biological Crystallography · 2004 · 3.8K citations · Full text

, , +13

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

Marketa Zvelebil, Geoffrey J. Barton, William R. Taylor et al. · Journal of Molecular Biology · 1987 · 447 citations

, , +14

4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing

Philipp N Seibel, Tobias Müller, Thomas Dandekar et al. · BMC Bioinformatics · 2006 · 404 citations · Full text

, , +12

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

David H. Mathews, Douglas H. Turner · Journal of Molecular Biology · 2002 · 375 citations

, , +14

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss · PLoS ONE · 2009 · 322 citations · Full text

, , +15

1–5 of 143

Authors

453

  1. DH
    David H. Mathews

    University of Rochester Medical Center, United States

    5 publications · 519 citations

    6

    h-index

  2. RG
    Robert Giegerich

    Bielefeld University, Germany

    4 publications · 300 citations

    4

    h-index

  3. TD
    Thomas Dandekar

    University of Würzburg, Germany

    4 publications · 854 citations

    4

    h-index

  4. GJ
    Geoffrey J. Barton

    University of Dundee, United Kingdom

    4 publications · 700 citations

    4

    h-index

  5. KA
    Kiyoshi Asai

    The University of Tokyo, Japan

    4 publications · 145 citations

    4

    h-index

1–5 of 453

Institutions

238

  1. Centre National de la Recherche Scientifique

    Paris, France

    8 h-index

    17 publications

    798 citations

  2. University of Rochester

    Rochester, United States

    4 h-index

    7 publications

    908 citations

  3. The University of Tokyo

    Tokyo, Japan

    4 h-index

    11 publications

    451 citations

  4. University of Würzburg

    Würzburg, Germany

    4 h-index

    15 publications

    3.8K citations

  5. University of Rochester Medical Center

    Rochester, United States

    4 h-index

    5 publications

    221 citations

  6. National Institute of Advanced Industrial Science and Technology

    Tsukuba, Japan

    4 h-index

    11 publications

    472 citations

  7. National Cancer Institute

    Bethesda, United States

    4 h-index

    10 publications

    607 citations

  8. Bielefeld University

    Bielefeld, Germany

    4 h-index

    13 publications

    1.2K citations

1–8 of 238

Venues

  1. Bioinformatics

    18 publications · 1.3K citations

    16

    h-index

  2. BMC Bioinformatics

    11 publications · 1.2K citations

    10

    h-index

  3. Nucleic Acids Research

    9 publications · 706 citations

    9

    h-index

  4. Proteins Structure Function and Bioinformatics

    7 publications · 430 citations

    7

    h-index

  5. PubMed

    Repository · 7 publications · 423 citations

    7

    h-index

1–5