Concepedia

Scaffold Graph Construction

Scaffold Graph Construction is a computational method in hybrid assembly that organizes contigs into a hierarchical structure by representing their inferred adjacency relationships as nodes and edges in a graph, enabling the systematic resolution of genomic architecture.

17

Publications

6.9K

Citations

100

Authors

50

Institutions

Publications per year

2017–2026

7

Parents

Publications

17

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

M<scp>e</scp>D<scp>u</scp>S<scp>a</scp>: a multi-draft based scaffolder

Emanuele Bosi, Beatrice Donati, Marco Galardini et al. · Bioinformatics · 2015 · 433 citations · Full text

, , +17

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Andrew Adey, Jacob O. Kitzman, Joshua N. Burton et al. · Genome Research · 2014 · 200 citations · Full text

, , +14

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

Song Gao, Wing‐Kin Sung, Niranjan Nagarajan · Journal of Computational Biology · 2011 · 198 citations · Full text

, , +16

Scaffold-based molecular design with a graph generative model

Chemical Science · 2019 · 145 citations · Full text

, , +10

1–5 of 17

Authors

100

  1. ML
    Min Li

    Central South University, China

    2 publications · 55 citations

    2

    h-index

  2. JW
    Jianxin Wang

    Central South University, China

    2 publications · 55 citations

    2

    h-index

  3. FW
    Fang‐Xiang Wu

    University of Saskatchewan, Canada

    2 publications · 55 citations

    2

    h-index

  4. FC
    Fang Chen

    Shanghai Jiao Tong University, China

    1 publications · 19 citations

    1

    h-index

  5. JY
    Jianying Yuan

    BGI Group (China), China

    1 publications · 5.6K citations

    1

    h-index

1–5 of 100

Institutions

50

  1. University of Hong Kong

    Pok Fu Lam, Hong Kong

    2 h-index

    8 publications

    39.4K citations

  2. Central South University

    Changsha, China

    2 h-index

    9 publications

    236 citations

  3. University of Cambridge

    Cambridge, United Kingdom

    2 h-index

    4 publications

    508 citations

  4. University of Saskatchewan

    Saskatoon, Canada

    2 h-index

    2 publications

    55 citations

  5. South China University of Technology

    Guangzhou, China

    2 h-index

    2 publications

    5.7K citations

  6. National University of Defense Technology

    Changsha, China

    1 h-index

    4 publications

    22.4K citations

  7. Hunan University

    Changsha, China

    1 h-index

    3 publications

    240 citations

  8. Hong Kong University of Science and Technology

    Hong Kong, Hong Kong

    1 h-index

    1 publications

    80 citations

1–8 of 50

Venues

  1. Bioinformatics

    5 publications · 553 citations

    5

    h-index

  2. BMC Bioinformatics

    3 publications · 65 citations

    3

    h-index

  3. Journal of Computational Biology

    1 publications · 198 citations

    1

    h-index

  4. Organic Letters

    OL · 1 publications · 28 citations

    1

    h-index

  5. Lecture notes in computer science

    LNCS · Book series · 1 publications · 17 citations

    1

    h-index

1–5