Concepedia

Scaffold Construction

Scaffold Construction is a genome assembly procedure that orders, orients, and links contigs into larger scaffold sequences by integrating long-range positional information (e.g., mate-pair, long-read, or mapping data) while representing unresolved intervening regions as gaps of estimated length.

689

Publications

68.8K

Citations

3.8K

Authors

1.2K

Institutions

Publications per year

2017–2026

274

Variants

Scaffolding

Parents

Children

Publications

689

SOAPdenovo2: an empirically improved memory-efficient short-read <i>de novo</i> assembler

Ruibang Luo, Binghang Liu, Yinlong Xie et al. · GigaScience · 2012 · 5.6K citations · Full text

, , +17

De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer et al. · Science · 2017 · 3K citations · Full text

, , +16

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer, Christiaan V. Henkel, Hans J. Jansen et al. · Bioinformatics · 2010 · 2.5K citations · Full text

, , +16

YaHS: yet another Hi-C scaffolding tool

Chenxi Zhou, Shane McCarthy, Richard Durbin · Bioinformatics · 2022 · 2.3K citations · Full text

, , +17

Design and construction of a new class of scaffolding-like materials comprising infinite polymeric frameworks of 3D-linked molecular rods. A reappraisal of the zinc cyanide and cadmium cyanide structures and the synthesis and structure of the diamond-related frameworks [N(CH3)4][CuIZnII(CN)4] and CuI[4,4',4'',4'''-tetracyanotetraphenylmethane]BF4.xC6H5NO2

B.F. Hoskins, Richard Robson · Journal of the American Chemical Society · 1990 · 1.9K citations

, , +8

1–5 of 689

Authors

3.8K

  1. İB
    İnanç Birol

    Canada's Michael Smith Genome Sciences Centre, Canada

    7 publications · 1.2K citations

    7

    h-index

  2. EL
    Erez Lieberman Aiden

    Baylor College of Medicine, United States

    6 publications · 3.8K citations

    6

    h-index

  3. MP
    Mihai Pop

    University of Maryland, College Park, United States

    6 publications · 1.5K citations

    6

    h-index

  4. OD
    Olga Dudchenko

    Baylor College of Medicine, United States

    6 publications · 3.8K citations

    6

    h-index

  5. WC
    Wesley C. Warren

    Washington University in St. Louis, United States

    6 publications · 217 citations

    6

    h-index

1–5 of 3.8K

Institutions

1.2K

  1. Centre National de la Recherche Scientifique

    Paris, France

    16 h-index

    65 publications

    2.8K citations

  2. Chinese Academy of Sciences

    Beijing, China

    15 h-index

    93 publications

    8.2K citations

  3. Massachusetts Institute of Technology

    Cambridge, United States

    15 h-index

    56 publications

    15.4K citations

  4. University of California, Berkeley

    Berkeley, United States

    13 h-index

    54 publications

    9.7K citations

  5. University of California, Davis

    Davis, United States

    12 h-index

    35 publications

    2.1K citations

  6. University of Copenhagen

    Copenhagen, Denmark

    12 h-index

    32 publications

    1.1K citations

  7. University of Maryland, College Park

    College Park, United States

    12 h-index

    28 publications

    9.8K citations

  8. University of Cambridge

    Cambridge, United Kingdom

    12 h-index

    49 publications

    12.4K citations

1–8 of 1.2K

Venues

  1. Acta Biomaterialia

    23 publications · 1.9K citations

    22

    h-index

  2. G3 Genes Genomes Genetics

    22 publications · 1.1K citations

    19

    h-index

  3. Bioinformatics

    23 publications · 7.2K citations

    19

    h-index

  4. GigaScience

    18 publications · 6.6K citations

    16

    h-index

  5. Materials Letters

    19 publications · 733 citations

    15

    h-index

1–5