Concepedia

Linked-read Scaffolding

Linked-Read Scaffolding is a computational genomics method that belongs to the class of genome assembly techniques, distinguished by its use of barcoded short reads to link distant genomic regions and resolve long-range sequence information during scaffolding.

15

Publications

1.4K

Citations

152

Authors

84

Institutions

Publications per year

2017–2026

15

Parents

Publications

15

Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing

Srinivas R. Viswanathan, Gavin Ha, Andreas Hoff et al. · Cell · 2018 · 379 citations · Full text

, , +15

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Andreas Wållberg, Ignas Bunikis, Olga Vinnere Pettersson et al. · BMC Genomics · 2019 · 278 citations · Full text

, , +14

ARCS: scaffolding genome drafts with linked reads

Sarah Yeo, Lauren Coombe, René L. Warren et al. · Bioinformatics · 2017 · 234 citations · Full text

, , +15

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk et al. · BMC Bioinformatics · 2018 · 142 citations · Full text

, , +17

LongStitch: high-quality genome assembly correction and scaffolding using long reads

Lauren Coombe, Janet X. Li, Theodora Lo et al. · BMC Bioinformatics · 2021 · 81 citations · Full text

, , +14

1–5 of 15

Authors

152

  1. LC
    Lauren Coombe

    Canada's Michael Smith Genome Sciences Centre, Canada

    4 publications · 474 citations

    4

    h-index

  2. İB
    İnanç Birol

    Canada's Michael Smith Genome Sciences Centre, Canada

    4 publications · 474 citations

    4

    h-index

  3. RL
    René L. Warren

    Canada's Michael Smith Genome Sciences Centre, Canada

    4 publications · 474 citations

    4

    h-index

  4. JC
    Justin Chu

    Canada's Michael Smith Genome Sciences Centre, Canada

    3 publications · 393 citations

    3

    h-index

  5. RJ
    Richard J. Edwards

    UNSW Sydney, Australia

    2 publications · 48 citations

    2

    h-index

1–5 of 152

Institutions

84

  1. UNSW Sydney

    Sydney, Australia

    2 h-index

    10 publications

    240 citations

  2. Canada's Michael Smith Genome Sciences Centre

    Vancouver, Canada

    2 h-index

    8 publications

    709 citations

  3. The University of Queensland

    Brisbane, Australia

    2 h-index

    3 publications

    74 citations

  4. Uppsala University

    Uppsala, Sweden

    2 h-index

    8 publications

    1.5K citations

  5. University of Illinois Urbana-Champaign

    Urbana, United States

    2 h-index

    4 publications

    580 citations

  6. Environmental Earth Sciences

    Sydney, Australia

    2 h-index

    5 publications

    118 citations

  7. Universidade Federal de Pernambuco

    Recife, Brazil

    1 h-index

    1 publications

    34 citations

  8. Icahn School of Medicine at Mount Sinai

    New York, United States

    1 h-index

    1 publications

    379 citations

1–8 of 84

Venues

  1. BMC Genomics

    3 publications · 367 citations

    3

    h-index

  2. Molecular Ecology Resources

    2 publications · 48 citations

    2

    h-index

  3. BMC Bioinformatics

    2 publications · 223 citations

    2

    h-index

  4. G3 Genes Genomes Genetics

    2 publications · 46 citations

    2

    h-index

  5. Bioinformatics

    2 publications · 274 citations

    2

    h-index

1–5