Concepedia

Repeat-aware Assembly

Repeat-Aware Assembly is a long-read assembly method that explicitly identifies and resolves repetitive genomic regions during the construction of contiguous sequences to improve accuracy and contiguity in genome reconstruction.

42

Publications

17.4K

Citations

178

Authors

75

Institutions

Publications per year

2017–2026

15

Parents

Publications

42

Canu: scalable and accurate long-read assembly via adaptive <i>k</i> -mer weighting and repeat separation

Sergey Koren, Brian P. Walenz, Konstantin Berlin et al. · Genome Research · 2017 · 8.2K citations · Full text

, , +16

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin et al. · Nature Biotechnology · 2019 · 6.3K citations

, , +13

TIGR Assembler: A New Tool for Assembling Large Shotgun Sequencing Projects

Granger G. Sutton, Owen White, Mark D. Adams et al. · Genome Science and Technology · 1995 · 410 citations

, , +16

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies et al. · PLoS ONE · 2009 · 225 citations · Full text

, , +17

FinisherSC: a repeat-aware tool for upgrading <i>de novo</i> assembly using long reads

Ka-Kit Lam, Kurt LaButti, Asif Khalak et al. · Bioinformatics · 2015 · 199 citations

, , +14

1–5 of 42

Authors

178

  1. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    3 publications · 8.3K citations

    4

    h-index

  2. BP
    Brian P. Walenz

    National Human Genome Research Institute, United States

    3 publications · 8.3K citations

    4

    h-index

  3. DT
    David Tse

    University of California, Berkeley, United States

    4 publications · 404 citations

    4

    h-index

  4. JM
    Jason Miller

    J. Craig Venter Institute, United States

    3 publications · 8.3K citations

    3

    h-index

  5. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    2 publications · 8.3K citations

    3

    h-index

1–5 of 178

Institutions

75

  1. University of California, Berkeley

    Berkeley, United States

    5 h-index

    12 publications

    1K citations

  2. National Human Genome Research Institute

    Bethesda, United States

    4 h-index

    8 publications

    25.4K citations

  3. J. Craig Venter Institute

    La Jolla, United States

    4 h-index

    8 publications

    8.4K citations

  4. National Institutes of Health

    Bethesda, United States

    3 h-index

    8 publications

    25.4K citations

  5. Stanford University

    Stanford, United States

    3 h-index

    7 publications

    541 citations

  6. University of Georgia

    Athens, United States

    2 h-index

    5 publications

    304 citations

  7. University of Maryland, College Park

    College Park, United States

    2 h-index

    5 publications

    433 citations

  8. Universidade Federal do Rio de Janeiro

    Rio de Janeiro, Brazil

    2 h-index

    3 publications

    196 citations

1–8 of 75

Venues

  1. Bioinformatics

    6 publications · 542 citations

    6

    h-index

  2. BMC Bioinformatics

    6 publications · 214 citations

    6

    h-index

  3. Genome Research

    GR · 6 publications · 8.7K citations

    6

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 161 citations

    3

    h-index

  5. Nucleic Acids Research

    2 publications · 55 citations

    2

    h-index

1–5