Concepedia

Regulon Inference

Regulon Inference is a computational method in regulatory network inference that identifies a regulon—a set of co-regulated genes controlled by a common transcription factor—by integrating gene expression data with regulatory prior knowledge to distinguish direct regulatory interactions from indirect associations.

41

Publications

4.4K

Citations

233

Authors

127

Institutions

Publications per year

2017–2026

15

Parents

Publications

41

Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles

Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden et al. · PLoS Biology · 2007 · 1.6K citations · Full text

, , +16

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

Pavel S. Novichkov, Alexey E. Kazakov, Dmitry A. Ravcheev et al. · BMC Genomics · 2013 · 494 citations · Full text

, , +15

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

Sophia Müller‐Dott, Eirini Tsirvouli, Miguél Vázquez et al. · Nucleic Acids Research · 2023 · 325 citations · Full text

, , +13

SIRENE: supervised inference of regulatory networks

Fantine Mordelet, Jean‐Philippe Vert · Bioinformatics · 2008 · 202 citations · Full text

, , +15

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

Pavel S. Novichkov, Olga N. Laikova, E. S. Novichkova et al. · Nucleic Acids Research · 2009 · 178 citations · Full text

, , +17

1–5 of 41

Authors

233

  1. DA
    Dmitry A. Rodionov

    Sanford Burnham Prebys Medical Discovery Institute, United States

    5 publications · 967 citations

    5

    h-index

  2. ID
    Inna Dubchak

    Lawrence Berkeley National Laboratory, United States

    4 publications · 900 citations

    4

    h-index

  3. AP
    Adam P. Arkin

    Lawrence Berkeley National Laboratory, United States

    4 publications · 900 citations

    4

    h-index

  4. PS
    Pavel S. Novichkov

    Lawrence Berkeley National Laboratory, United States

    3 publications · 807 citations

    3

    h-index

  5. MS
    Mikhail S. Gelfand

    Institute for Information Transmission Problems, Russia

    3 publications · 406 citations

    3

    h-index

1–5 of 233

Institutions

127

  1. Lawrence Berkeley National Laboratory

    Berkeley, United States

    4 h-index

    27 publications

    6.3K citations

  2. Institute for Information Transmission Problems

    Moscow, Russia

    4 h-index

    15 publications

    4K citations

  3. Sanford Burnham Prebys Medical Discovery Institute

    La Jolla, United States

    3 h-index

    7 publications

    1.3K citations

  4. Lomonosov Moscow State University

    Moscow, Russia

    3 h-index

    9 publications

    1.8K citations

  5. University of Bonn

    Bonn, Germany

    2 h-index

    2 publications

    57 citations

  6. University of California, Berkeley

    Berkeley, United States

    2 h-index

    8 publications

    1.3K citations

  7. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    5 publications

    89 citations

  8. Joint Genome Institute

    Berkeley, United States

    2 h-index

    8 publications

    1.3K citations

1–8 of 127

Venues

  1. BMC Bioinformatics

    5 publications · 104 citations

    5

    h-index

  2. PLoS ONE

    5 publications · 131 citations

    5

    h-index

  3. Nucleic Acids Research

    5 publications · 732 citations

    5

    h-index

  4. Bioinformatics

    4 publications · 258 citations

    4

    h-index

  5. BMC Genomics

    2 publications · 587 citations

    2

    h-index

1–5