Sophia Müller‐Dott

decoupleR: ensemble of computational methods to infer biological activities from omics data

Pau Badia-i-Mompel, Jesús Vélez Santiago, Jana M. Braunger et al. · Bioinformatics Advances · 2022 · 1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +11

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

Sophia Müller‐Dott, Eirini Tsirvouli, Miguél Vázquez et al. · Nucleic Acids Research · 2023 · 325 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks

Aryan Kamal, Christian Arnold, Annique Claringbould et al. · Molecular Systems Biology · 2023 · 65 citations · Full text

Life Sciences, Bioinformatics, Genetics +16

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

Sophia Müller‐Dott, Eirini Tsirvouli, Miguél Vázquez et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2023 · 35 citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +13

decoupleR: Ensemble of computational methods to infer biological activities from omics data

Pau Badia-i-Mompel, Jesús Vélez, Jana M. Braunger et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 30 citations · Full text

Life Sciences, Bioinformatics, Systems Biology +11