Concepedia

Reference-guided Transcriptome Assembly

Reference-Guided Transcriptome Assembly is a transcriptome reconstruction method that belongs to the class of assembly strategies utilizing a reference genome sequence, distinguished by its reliance on aligning RNA-Seq reads to a known genome to guide the reconstruction of full-length transcripts with increased accuracy and continuity.

17

Publications

3.6K

Citations

93

Authors

50

Institutions

Publications per year

2017–2026

12

Parents

Publications

17

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · Genome biology · 2019 · 2.1K citations · Full text

, , +17

rnaSPAdes: a <i>de novo</i> transcriptome assembler and its application to RNA-Seq data

Elena Bushmanova, Dmitry Antipov, Alla Lapidus et al. · GigaScience · 2019 · 900 citations · Full text

, , +15

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 109 citations · Full text

, , +17

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Ka Ming Nip, Readman Chiu, Chen Yang et al. · Genome Research · 2020 · 100 citations · Full text

, , +16

Challenges and advances for transcriptome assembly in non-model species

Arnaud Ungaro, Nicolas Pech, Jean‐François Martin et al. · PLoS ONE · 2017 · 67 citations · Full text

, , +17

1–5 of 17

Authors

93

  1. AD
    Andrey D. Prjibelski

    St Petersburg University, Russia

    2 publications · 931 citations

    2

    h-index

  2. RR
    Roham Razaghi

    Johns Hopkins University, United States

    2 publications · 2.2K citations

    2

    h-index

  3. MP
    Mihaela Pertea

    Johns Hopkins University, United States

    2 publications · 2.2K citations

    2

    h-index

  4. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    2 publications · 2.2K citations

    2

    h-index

  5. AV
    Aleksey V. Zimin

    Johns Hopkins University, United States

    2 publications · 2.2K citations

    2

    h-index

1–5 of 93

Institutions

50

  1. Johns Hopkins University

    Baltimore, United States

    2 h-index

    12 publications

    13.3K citations

  2. St Petersburg University

    Saint Petersburg, Russia

    2 h-index

    8 publications

    3.7K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    12 publications

    690 citations

  4. Institut de Recherche pour le Développement

    Marseille, France

    2 h-index

    12 publications

    690 citations

  5. University of North Texas

    Denton, United States

    1 h-index

    1 publications

    49 citations

  6. Chinese Academy of Agricultural Sciences

    Beijing, China

    1 h-index

    8 publications

    160 citations

  7. Yangzhou University

    Yangzhou, China

    1 h-index

    1 publications

    20 citations

  8. Universidade Federal de Viçosa

    Viçosa, Brazil

    1 h-index

    2 publications

    24 citations

1–8 of 50

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 188 citations

    3

    h-index

  2. Scientific Reports

    2 publications · 64 citations

    2

    h-index

  3. PLoS ONE

    1 publications · 67 citations

    1

    h-index

  4. GigaScience

    1 publications · 900 citations

    1

    h-index

  5. Genome Research

    GR · 1 publications · 100 citations

    1

    h-index

1–5