Concepedia

Reference-free Metagenomics

Reference-Free Metagenomics is a metagenomic analysis approach that characterizes microbial community composition and function directly from sequencing reads without relying on alignment to reference genomes or databases.

9

Publications

251

Citations

30

Authors

14

Institutions

Publications per year

2017–2026

7

Parents

Publications

9

MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data

Vladimir Ulyantsev, Veronika Dubinkina, Alexander Tyakht et al. · Bioinformatics · 2016 · 52 citations

, , +16

Using populations of human and microbial genomes for organism detection in metagenomes

Sasha Ames, Shea N. Gardner, Jose Manuel Martí et al. · Genome Research · 2015 · 44 citations · Full text

, , +14

MetaBCC-LR: <i>meta</i>genomics <i>b</i>inning by <i>c</i>overage and <i>c</i>omposition for <i>l</i>ong <i>r</i>eads

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan et al. · Bioinformatics · 2020 · 37 citations · Full text

, , +16

Binning long reads in metagenomics datasets using composition and coverage information

Anuradha Wickramarachchi, Yu Lin · Algorithms for Molecular Biology · 2022 · 29 citations · Full text

, , +15

Comparison of microbiome samples: methods and computational challenges

Matteo Comin, Barbara Di Camillo, Cinzia Pizzi et al. · Briefings in Bioinformatics · 2020 · 28 citations · Full text

, , +15

1–5 of 9

Authors

30

  1. AW
    Anuradha Wickramarachchi

    Australian National University, Australia

    2 publications · 66 citations

    2

    h-index

  2. XX
    Xin Xing

    Harvard University, United States

    2 publications · 36 citations

    2

    h-index

  3. YL
    Yu Lin

    Australian National University, Australia

    2 publications · 66 citations

    2

    h-index

  4. SN
    Shea N. Gardner

    Lawrence Livermore National Laboratory, United States

    1 publications · 44 citations

    1

    h-index

  5. JA
    Jonathan Allen

    Lawrence Livermore National Laboratory, United States

    1 publications · 44 citations

    1

    h-index

1–5 of 30

Institutions

14

  1. Australian National University

    Canberra, Australia

    2 h-index

    5 publications

    169 citations

  2. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    36 citations

  3. University of Georgia

    Athens, United States

    2 h-index

    4 publications

    72 citations

  4. Lawrence Livermore National Laboratory

    Livermore, United States

    1 h-index

    5 publications

    220 citations

  5. University of Padua

    Padua, Italy

    1 h-index

    4 publications

    112 citations

  6. Moscow Institute of Physics and Technology

    Dolgoprudnyy, Russia

    1 h-index

    3 publications

    156 citations

  7. Lawrence Livermore National Security

    Livermore, United States

    1 h-index

    3 publications

    132 citations

  8. University of Florida

    Gainesville, United States

    1 h-index

    5 publications

    65 citations

1–8 of 14

Venues

  1. Bioinformatics

    4 publications · 117 citations

    4

    h-index

  2. Genome Research

    GR · 2 publications · 56 citations

    2

    h-index

  3. Genome biology

    1 publications · 21 citations

    1

    h-index

  4. Briefings in Bioinformatics

    1 publications · 28 citations

    1

    h-index

  5. Algorithms for Molecular Biology

    AMB · 1 publications · 29 citations

    1

    h-index

1–5