Concepedia

Reference-free Binning

Reference-Free Binning is a metagenome binning method that clusters sequencing reads or contigs into taxonomic units without relying on reference genomes, distinguishing it from reference-dependent approaches by enabling de novo reconstruction of microbial genomes directly from environmental samples.

9

Publications

419

Citations

38

Authors

13

Institutions

Publications per year

2017–2026

8

Parents

Publications

9

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data

Florian Plaza Oñate, Emmanuelle Le Chatelier, Mathieu Almeida et al. · Bioinformatics · 2018 · 145 citations · Full text

, , +17

Autometa: automated extraction of microbial genomes from individual shotgun metagenomes

Ian Miller, Evan Rees, Jennifer M. Ross et al. · Nucleic Acids Research · 2019 · 103 citations · Full text

, , +14

MetaBCC-LR: <i>meta</i>genomics <i>b</i>inning by <i>c</i>overage and <i>c</i>omposition for <i>l</i>ong <i>r</i>eads

Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan et al. · Bioinformatics · 2020 · 37 citations · Full text

, , +16

Adversarial and variational autoencoders improve metagenomic binning

Pau Piera Líndez, Joachim Johansen, Svetlana Kutuzova et al. · Communications Biology · 2023 · 32 citations · Full text

, , +14

Binning long reads in metagenomics datasets using composition and coverage information

Anuradha Wickramarachchi, Yu Lin · Algorithms for Molecular Biology · 2022 · 29 citations · Full text

, , +15

1–5 of 9

Authors

38

  1. IM
    Izaak Miller

    University of Wisconsin–Madison, United States

    2 publications · 122 citations

    2

    h-index

  2. IM
    Ian Miller

    University of Wisconsin–Madison, United States

    2 publications · 122 citations

    2

    h-index

  3. FE
    Federico E. Rey

    University of Wisconsin–Madison, United States

    2 publications · 122 citations

    2

    h-index

  4. YL
    Yu Lin

    Australian National University, Australia

    2 publications · 66 citations

    2

    h-index

  5. JM
    Jennifer M. Ross

    University of Washington, United States

    2 publications · 122 citations

    2

    h-index

1–5 of 38

Institutions

13

  1. University of Georgia

    Athens, United States

    2 h-index

    4 publications

    72 citations

  2. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    18 publications

    1.1K citations

  3. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    36 citations

  4. Australian National University

    Canberra, Australia

    2 h-index

    5 publications

    169 citations

  5. Enterome (France)

    Paris, France

    1 h-index

    3 publications

    435 citations

  6. University of Copenhagen

    Copenhagen, Denmark

    1 h-index

    6 publications

    192 citations

  7. National University of Singapore

    Singapore, Singapore

    1 h-index

    1 publications

    37 citations

  8. CentraleSupélec

    Gif-sur-Yvette, France

    1 h-index

    1 publications

    145 citations

1–8 of 13

Venues

  1. Bioinformatics

    3 publications · 197 citations

    3

    h-index

  2. Communications Biology

    1 publications · 32 citations

    1

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 19 citations

    1

    h-index

  4. Genome biology

    1 publications · 21 citations

    1

    h-index

  5. BMC Bioinformatics

    1 publications · 18 citations

    1

    h-index

1–5