Concepedia

Reference-based Assembly

Reference-Based Assembly is a genome assembly strategy that belongs to the class of sequence reconstruction methods, distinguished by its reliance on aligning and organizing sequencing reads relative to an existing reference genome to infer the structure of the target genome.

197

Publications

40.4K

Citations

1.4K

Authors

518

Institutions

Publications per year

2017–2026

108

Parents

Publications

197

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

Heng Li · arXiv (Cornell University) · 2014 · 5.8K citations · Full text

, , +17

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

Heng Li · DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2013 · 5.3K citations · Full text

, , +17

CADD: predicting the deleteriousness of variants throughout the human genome

Philipp Rentzsch, Daniela Witten, Gregory M. Cooper et al. · Nucleic Acids Research · 2018 · 3.9K citations · Full text

, , +17

ABySS: A parallel assembler for short read sequence data

Jared T. Simpson, Kim Wong, Shaun D. Jackman et al. · Genome Research · 2009 · 3.8K citations · Full text

, , +17

Scaling accurate genetic variant discovery to tens of thousands of samples

Ryan Poplin, Valentín Ruano-Rubio, Mark A. DePristo et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 2.1K citations · Full text

, , +17

1–5 of 197

Authors

1.4K

  1. EE
    Evan E. Eichler

    University of Washington, United States

    8 publications · 2.3K citations

    8

    h-index

  2. DM
    Deanna M. Church

    National Center for Biotechnology Information, United States

    8 publications · 3K citations

    8

    h-index

  3. PF
    Paul Flicek

    European Bioinformatics Institute, United Kingdom

    7 publications · 2.5K citations

    7

    h-index

  4. VS
    Valérie Schneider

    National Center for Biotechnology Information, United States

    7 publications · 2.5K citations

    7

    h-index

  5. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    6 publications · 3.1K citations

    6

    h-index

1–5 of 1.4K

Institutions

518

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    12 h-index

    22 publications

    4.1K citations

  2. National Institutes of Health

    Bethesda, United States

    12 h-index

    62 publications

    29.7K citations

  3. National Center for Biotechnology Information

    Bethesda, United States

    11 h-index

    49 publications

    24K citations

  4. Wellcome Sanger Institute

    Cambridge, United Kingdom

    10 h-index

    61 publications

    29.1K citations

  5. Broad Institute

    Cambridge, United States

    10 h-index

    43 publications

    47.1K citations

  6. University of Washington

    Seattle, United States

    10 h-index

    39 publications

    18.2K citations

  7. University of California, Davis

    Davis, United States

    10 h-index

    32 publications

    11.7K citations

  8. Chinese Academy of Sciences

    Beijing, China

    10 h-index

    36 publications

    1.8K citations

1–8 of 518

Venues

  1. BMC Genomics

    15 publications · 861 citations

    13

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 14 publications · 2.8K citations

    12

    h-index

  3. Scientific Reports

    11 publications · 455 citations

    11

    h-index

  4. PLoS ONE

    10 publications · 661 citations

    10

    h-index

  5. BMC Bioinformatics

    10 publications · 475 citations

    10

    h-index

1–5