Concepedia

Read Preprocessing

Read Preprocessing is a computational procedure within metagenomic data quality control that comprises the systematic transformation and filtering of raw sequencing reads to remove technical artifacts, improve data fidelity, and prepare samples for downstream analysis.

44

Publications

73.4K

Citations

201

Authors

103

Institutions

Publications per year

2017–2026

23

Parents

Publications

44

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

, , +13

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante et al. · PLoS ONE · 2013 · 484 citations · Full text

, , +17

QuasR: quantification and annotation of short reads in R

Dimos Gaidatzis, Anita Lerch, Florian Hahne et al. · Bioinformatics · 2014 · 348 citations · Full text

, , +15

Atropos: specific, sensitive, and speedy trimming of sequencing reads

John P. Didion, Marcel Martin, Francis S. Collins · PeerJ · 2017 · 292 citations · Full text

, , +14

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson et al. · Bioinformatics · 2015 · 242 citations · Full text

, , +17

1–5 of 44

Authors

201

  1. FD
    Frederic D. Bushman

    University of Pennsylvania, United States

    2 publications · 262 citations

    2

    h-index

  2. WK
    W. Kelley Thomas

    University of New Hampshire, United States

    2 publications · 94 citations

    2

    h-index

  3. JM
    John M. Gaspar

    Simon Fraser University, Canada

    2 publications · 94 citations

    2

    h-index

  4. EC
    Erik Clarke

    University of Pennsylvania, United States

    2 publications · 262 citations

    2

    h-index

  5. CZ
    Chunyu Zhao

    Chan Zuckerberg Initiative (United States), United States

    2 publications · 262 citations

    2

    h-index

1–5 of 201

Institutions

103

  1. University of Pennsylvania

    Philadelphia, United States

    3 h-index

    9 publications

    1.1K citations

  2. Children's Hospital of Philadelphia

    Philadelphia, United States

    2 h-index

    8 publications

    1K citations

  3. University of Utah

    Salt Lake City, United States

    2 h-index

    4 publications

    828 citations

  4. University of Padua

    Padua, Italy

    2 h-index

    6 publications

    470 citations

  5. University of New Hampshire

    Durham, United States

    2 h-index

    4 publications

    188 citations

  6. Universidad EAFIT

    Medellín, Colombia

    1 h-index

    1 publications

    167 citations

  7. Istituto di Genomica Applicata

    Udine, Italy

    1 h-index

    4 publications

    1.9K citations

  8. North Seattle College

    Seattle, United States

    1 h-index

    1 publications

    167 citations

1–8 of 103

Venues

  1. BMC Bioinformatics

    6 publications · 199 citations

    6

    h-index

  2. Bioinformatics

    4 publications · 70.3K citations

    4

    h-index

  3. PLoS ONE

    3 publications · 791 citations

    3

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 223 citations

    3

    h-index

  5. Briefings in Bioinformatics

    2 publications · 82 citations

    2

    h-index

1–5