Concepedia

Pseudotime Visualization

Pseudotime Visualization is a computational method in single-cell data visualization that reconstructs and graphically represents the temporal progression of cellular states along inferred developmental trajectories by ordering cells according to a hypothetical time dimension derived from gene expression dynamics.

5

Publications

152

Citations

27

Authors

13

Institutions

Publications per year

2017–2026

5

Parents

Publications

5

Poincaré maps for analyzing complex hierarchies in single-cell data

Anna Klimovskaia, David López-Paz, Léon Bottou et al. · Nature Communications · 2020 · 86 citations · Full text

, , +17

Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES

Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2022 · 19 citations · Full text

, , +15

DTFLOW: Inference and Visualization of Single-Cell Pseudotime Trajectory Using Diffusion Propagation

Jiangyong Wei, Tianshou Zhou, Xinan Zhang et al. · Genomics Proteomics & Bioinformatics · 2021 · 17 citations · Full text

, , +17

Poincaré Maps for Analyzing Complex Hierarchies in Single-Cell Data

Anna Klimovskaia, David López-Paz, Léon Bottou et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2019 · 15 citations · Full text

, , +17

TIPS: trajectory inference of pathway significance through pseudotime comparison for functional assessment of single-cell RNAseq data

Zihan Zheng, X. Qiu, Haiyang Wu et al. · Briefings in Bioinformatics · 2021 · 15 citations · Full text

, , +17

1–5 of 5

Authors

27

  1. MN
    Maximilian Nickel

    Meta (Israel), Israel

    2 publications · 101 citations

    2

    h-index

  2. LB
    Léon Bottou

    AT&T (United States), United States

    2 publications · 101 citations

    2

    h-index

  3. DL
    David López-Paz

    Meta (Israel), Israel

    2 publications · 101 citations

    2

    h-index

  4. AK
    Anna Klimovskaia

    European X-Ray Free-Electron Laser, Germany

    2 publications · 101 citations

    2

    h-index

  5. MS
    Micha Sam Brickman Raredon

    Yale University, United States

    1 publications · 19 citations

    1

    h-index

1–5 of 27

Institutions

13

  1. Meta (United States)

    Menlo Park, United States

    2 h-index

    5 publications

    288 citations

  2. Army Medical University

    Chongqing, China

    1 h-index

    7 publications

    105 citations

  3. Monash University

    Melbourne, Australia

    1 h-index

    1 publications

    17 citations

  4. Meta (Israel)

    Tel Aviv, Israel

    1 h-index

    1 publications

    86 citations

  5. Huazhong Agricultural University

    Wuhan, China

    1 h-index

    1 publications

    17 citations

  6. Chongqing Medical University

    Chongqing, China

    1 h-index

    1 publications

    15 citations

  7. Sun Yat-sen University

    Guangzhou, China

    1 h-index

    1 publications

    17 citations

  8. Central China Normal University

    Wuhan, China

    1 h-index

    1 publications

    17 citations

1–8 of 13

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 34 citations

    2

    h-index

  2. Nature Communications

    1 publications · 86 citations

    1

    h-index

  3. Briefings in Bioinformatics

    1 publications · 15 citations

    1

    h-index

  4. Genomics Proteomics & Bioinformatics

    1 publications · 17 citations

    1

    h-index

1–4