Concepedia

Phylogenetic Reference Databases

Phylogenetic Reference Databases is a curated collection of classified genetic sequences organized according to evolutionary relationships that serves as a standardized framework for taxonomic assignment and phylogenetic placement of unknown microbial taxa.

330

Publications

64.7K

Citations

1.6K

Authors

667

Institutions

Publications per year

2017–2026

106

Parents

Publications

330

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis, Philip Hugenholtz, N. Larsen et al. · Applied and Environmental Microbiology · 2006 · 11.2K citations · Full text

, , +17

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

Elmar Pruesse, Christian Quast, Katrin Knittel et al. · Nucleic Acids Research · 2007 · 6.9K citations · Full text

, , +17

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Daniel McDonald, Morgan N. Price, Julia K. Goodrich et al. · The ISME Journal · 2011 · 5.3K citations · Full text

, , +17

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

Pelin Yilmaz, Laura Wegener Parfrey, Pablo Yarza et al. · Nucleic Acids Research · 2013 · 4.1K citations · Full text

, , +17

ISfinder: the reference centre for bacterial insertion sequences

Patricia Siguier · Nucleic Acids Research · 2005 · 2.8K citations · Full text

, , +17

1–5 of 330

Authors

1.6K

  1. JD
    Javier del Campo

    University of British Columbia, Canada

    6 publications · 2.7K citations

    6

    h-index

  2. PJ
    Patrick J. Keeling

    University of British Columbia, Canada

    6 publications · 352 citations

    6

    h-index

  3. FO
    Frank Oliver Glöckner

    Max Planck Institute for Marine Microbiology, Germany

    6 publications · 11.3K citations

    6

    h-index

  4. ES
    Erko Stackebrandt

    Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Germany

    6 publications · 760 citations

    6

    h-index

  5. RH
    R. Henrik Nilsson

    University of Gothenburg, Sweden

    6 publications · 1.7K citations

    6

    h-index

1–5 of 1.6K

Institutions

667

  1. Centre National de la Recherche Scientifique

    Paris, France

    19 h-index

    63 publications

    39.4K citations

  2. University of British Columbia

    Vancouver, Canada

    14 h-index

    49 publications

    40K citations

  3. Westerdijk Fungal Biodiversity Institute

    Utrecht, Netherlands

    8 h-index

    17 publications

    1.7K citations

  4. University of Gothenburg

    Gothenburg, Sweden

    7 h-index

    26 publications

    6K citations

  5. Mae Fah Luang University

    Chiang Rai, Thailand

    7 h-index

    8 publications

    234 citations

  6. Chinese Academy of Sciences

    Beijing, China

    7 h-index

    7 publications

    875 citations

  7. University of Florida

    Gainesville, United States

    7 h-index

    20 publications

    4.6K citations

  8. Natural History Museum

    London, United Kingdom

    7 h-index

    13 publications

    5.3K citations

1–8 of 667

Venues

  1. Nucleic Acids Research

    28 publications · 24.5K citations

    22

    h-index

  2. 13

    h-index

  3. Mycologia

    11 publications · 1.2K citations

    11

    h-index

  4. Systematic and Applied Microbiology

    10 publications · 824 citations

    10

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 11 publications · 1.4K citations

    10

    h-index

1–5