Concepedia

Pathway Inference

Pathway Inference is a computational method that identifies putative biochemical or regulatory pathways from molecular data by integrating prior knowledge with experimental evidence to reconstruct pathway structures absent in reference databases.

127

Publications

7.5K

Citations

590

Authors

291

Institutions

Publications per year

2017–2026

25

Parents

Publications

127

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

Charles Vaske, Stephen C. Benz, Dent Earl et al. · Bioinformatics · 2010 · 815 citations · Full text

, , +17

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

Yuzhen Ye, Thomas G. Doak · PLoS Computational Biology · 2009 · 713 citations · Full text

, , +15

A hybrid approach for efficient and robust parameter estimation in biochemical pathways

María Rodriguez-Fernández, Pedro Mendes, Julio R. Banga · Biosystems · 2005 · 307 citations

, , +11

Discovering molecular pathways from protein interactionand gene expression data

Eran Segal, Haiying Wang, Daphne Koller · Bioinformatics · 2003 · 306 citations

, , +13

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

Melissa Cline, Brian Craft, Teresa Swatloski et al. · Scientific Reports · 2013 · 290 citations · Full text

, , +17

1–5 of 127

Authors

590

  1. PD
    Peter D. Karp

    SRI International, United States

    3 publications · 366 citations

    3

    h-index

  2. TS
    Tomer Shlomi

    Technion – Israel Institute of Technology, Israel

    2 publications · 136 citations

    2

    h-index

  3. DS
    Dong‐Guk Shin

    University of Connecticut, United States

    2 publications · 36 citations

    2

    h-index

  4. PW
    Peter Woolf

    University of Michigan, United States

    2 publications · 40 citations

    2

    h-index

  5. HH
    Hasan H. Otu

    Beth Israel Deaconess Medical Center, United States

    2 publications · 65 citations

    2

    h-index

1–5 of 590

Institutions

291

  1. Harvard University

    Cambridge, United States

    7 h-index

    19 publications

    1.1K citations

  2. Massachusetts General Hospital

    Boston, United States

    5 h-index

    11 publications

    682 citations

  3. University of Michigan

    Ann Arbor, United States

    5 h-index

    15 publications

    322 citations

  4. Stanford University

    Stanford, United States

    5 h-index

    11 publications

    1.2K citations

  5. Howard Hughes Medical Institute

    Chevy Chase, United States

    5 h-index

    21 publications

    6.7K citations

  6. Heidelberg University

    Heidelberg, Germany

    4 h-index

    15 publications

    454 citations

  7. Broad Institute

    Cambridge, United States

    4 h-index

    16 publications

    1.1K citations

  8. Rice University

    Houston, United States

    3 h-index

    6 publications

    672 citations

1–8 of 291

Venues

  1. Bioinformatics

    17 publications · 1.7K citations

    14

    h-index

  2. BMC Bioinformatics

    10 publications · 569 citations

    10

    h-index

  3. PLoS Computational Biology

    8 publications · 1K citations

    8

    h-index

  4. Scientific Reports

    5 publications · 377 citations

    5

    h-index

  5. Briefings in Bioinformatics

    5 publications · 218 citations

    5

    h-index

1–5